ENST00000291672.6 SPATC1L
Information
- Transcript ID
- ENST00000291672.6
- Genome
- hg19
- Position
- chr21:47,581,074-47,604,373
- Strand
- -
- CDS length
- 1,023
- Amino acid length
- 341
- Gene symbol
- SPATC1L
- Gene type
- protein-coding
- Gene description
- spermatogenesis and centriole associated 1 like
- Gene Entrez Gene ID
- 84221
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 47,581,074 | 47,581,619 |
| 4 | 47,581,830 | 47,581,981 |
| 3 | 47,588,222 | 47,588,572 |
| 2 | 47,602,538 | 47,603,688 |
| 1 | 47,604,270 | 47,604,373 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 47,581,293 | 47,581,619 |
| 4 | CDS | 47,581,830 | 47,581,981 |
| 3 | CDS | 47,588,222 | 47,588,572 |
| 2 | CDS | 47,602,538 | 47,602,730 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr21 | 46,161,160 | 46,184,459 | Link |
CDS sequence
ATGGCTGAAGGCGGCGAGCTGATGAGCCGGCTCCTGAGCGAGAACGCGGACCTGAAGAAGCAGGTGCGCCTCCTGAAGGAGAATCAGATGCTGCGGCGGCTGCTCAGCCAGAGCTGCCAGGAGGGCGGCGGCCACGACCTGCTCCCACCCAGGGCGCATGCCTACCCTGAGGCCGGCTCCCCCGGGAGCGGAGTTCCAGATTTCGGAAGGTTCACGAGTGTTGCCGACACGCCCTCCCAACTGCAGACATCCTCCCTGGAGGACCTGCTGTGCTCACATGCCCCCCTGTCCAGCGAGGACGACACCTCCCCGGGCTGTGCAGCCCCCTCCCAGGCACCCTTCAAGGCCTTCCTCAGTCCCCCAGAGCCACATAGCCACCGAGGCACCGACAGGAAGCTGTCCCCGCTCCTGAGCCCCTTGCAAGACTCACTGGTGGACAAGACCCTGCTGGAGCCCAGGGAGATGGTCCGGCCTAAGAAGGTGTGTTTCTCGGAGAGCAGCCTGCCCACCGGGGACAGGACCAGGAGGAGCTACTACCTCAATGAGATCCAGAGCTTCGCGGGCGCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTCTACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGCGAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTCATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATCGACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTCGCCTGGTGA
Amino sequence
MAEGGELMSRLLSENADLKKQVRLLKENQMLRRLLSQSCQEGGGHDLLPPRAHAYPEAGSPGSGVPDFGRFTSVADTPSQLQTSSLEDLLCSHAPLSSEDDTSPGCAAPSQAPFKAFLSPPEPHSHRGTDRKLSPLLSPLQDSLVDKTLLEPREMVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW*