ENST00000381812.5 SDCBP2

Information
Transcript ID
ENST00000381812.5
Genome
hg19
Position
chr20:1,290,553-1,306,351
Strand
-
CDS length
879
Amino acid length
293
Gene symbol
SDCBP2
Gene type
protein-coding
Gene description
syndecan binding protein 2
Gene Entrez Gene ID
27111
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
9 1,290,553 1,291,139
8 1,291,444 1,291,535
7 1,292,981 1,293,152
6 1,293,231 1,293,406
5 1,293,984 1,294,142
4 1,298,962 1,299,062
3 1,300,234 1,300,303
2 1,301,007 1,301,079
1 1,306,232 1,306,351
CDS
Exon number Type Start Stop
9 CDS 1,291,085 1,291,139
8 CDS 1,291,444 1,291,535
7 CDS 1,292,981 1,293,152
6 CDS 1,293,231 1,293,406
5 CDS 1,293,984 1,294,142
4 CDS 1,298,962 1,299,062
3 CDS 1,300,234 1,300,303
2 CDS 1,301,007 1,301,060
Other genome
Genome Chromosome Start End Links
hg38 chr20 1,309,909 1,325,707 Link
CDS sequence
ATGTCATCCCTGTACCCATCTCTAGAGGACCTAAAAGTGGACCAAGCCATTCAGGCCCAGGTCAGAGCCTCACCCAAGATGCCAGCCCTGCCAGTCCAGGCAACAGCCATTTCCCCACCACCAGTTTTGTACCCAAACTTGGCAGAACTGGAAAATTATATGGGTCTTTCCCTCTCCAGCCAAGAAGTCCAGGAGAGCCTGCTTCAGATTCCAGAGGGTGACAGTACAGCGGTCTCGGGCCCCGGGCCCGGCCAGATGGTGGCACCGGTAACCGGGTACAGCCTGGGCGTGCGGCGAGCTGAGATCAAGCCCGGGGTGCGCGAGATCCACCTGTGCAAGGACGAGCGCGGCAAGACCGGGCTGAGGCTGCGGAAGGTCGACCAGGGGCTCTTTGTGCAGTTGGTCCAGGCCAACACCCCTGCATCCCTTGTGGGGCTGCGCTTTGGGGACCAGCTCCTGCAGATTGACGGGCGTGACTGTGCTGGGTGGAGCTCGCACAAAGCCCATCAGGTGGTGAAGAAGGCATCAGGCGATAAGATTGTCGTGGTGGTTCGGGACAGGCCGTTCCAGCGGACTGTCACCATGCACAAGGACAGCATGGGCCACGTCGGCTTCGTGATCAAGAAGGGGAAGATTGTCTCTCTGGTCAAAGGGAGTTCTGCGGCCCGCAACGGGCTCCTCACCAACCACTACGTGTGTGAGGTGGACGGGCAGAATGTTATCGGGCTGAAGGACAAAAAGATCATGGAGATTCTGGCCACGGCTGGGAACGTTGTCACCCTGACCATCATCCCCAGTGTGATCTACGAGCACATGGTCAAAAAGTTGCCTCCAGTCCTGCTCCACCACACCATGGACCACTCCATCCCAGATGCCTGA
Amino sequence
MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA*