ENST00000248668.5 LRFN1
Information
- Transcript ID
- ENST00000248668.5
- Genome
- hg19
- Position
- chr19:39,797,206-39,811,503
- Strand
- -
- CDS length
- 2,316
- Amino acid length
- 772
- Gene symbol
- LRFN1
- Gene type
- protein-coding
- Gene description
- leucine rich repeat and fibronectin type III domain containing 1
- Gene Entrez Gene ID
- 57622
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 39,797,206 | 39,799,182 |
| 4 | 39,804,571 | 39,806,013 |
| 3 | 39,806,722 | 39,806,776 |
| 2 | 39,808,966 | 39,808,998 |
| 1 | 39,811,433 | 39,811,503 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 39,798,273 | 39,799,182 |
| 4 | CDS | 39,804,571 | 39,805,976 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr19 | 39,306,566 | 39,320,863 | Link |
CDS sequence
ATGGCTCCAGGACCCTTCTCCTCGGCCCTCCTCTCGCCGCCGCCCGCTGCCCTGCCCTTTCTGCTGCTGCTCTGGGCGGGGGCATCTCGTGGCCAGCCCTGCCCCGGCCGCTGCATCTGCCAGAACGTGGCGCCCACACTGACAATGCTGTGCGCCAAGACCGGCTTGCTCTTTGTGCCGCCCGCCATCGACCGGCGCGTGGTGGAGCTGCGGCTCACCGACAACTTCATCGCCGCCGTGCGCCGCCGAGACTTCGCCAACATGACCAGCCTGGTGCACCTCACTCTCTCCCGGAACACCATCGGCCAGGTGGCAGCTGGCGCCTTCGCCGACCTGCGTGCCCTCCGGGCCCTGCACCTGGACAGCAACCGCCTGGCGGAGGTGCGCGGCGACCAGCTCCGCGGCCTGGGCAACCTCCGCCACCTGATCCTTGGAAACAACCAGATCCGCCGGGTGGAGTCGGCGGCCTTTGACGCCTTCCTGTCCACCGTGGAGGACCTGGATCTGTCCTACAACAACCTGGAGGCCCTGCCGTGGGAGGCGGTGGGCCAGATGGTGAACCTAAACACCCTCACGCTGGACCACAACCTCATCGACCACATCGCGGAGGGGACCTTCGTGCAGCTTCACAAGCTGGTCCGTCTGGACATGACCTCCAACCGCCTGCATAAACTCCCGCCCGACGGGCTCTTCCTGAGGTCGCAGGGCACCGGGCCCAAGCCGCCCACCCCGCTGACCGTCAGCTTCGGCGGCAACCCCCTGCACTGCAACTGCGAGCTGCTCTGGCTGCGGCGGCTGACCCGCGAGGACGACTTAGAGACCTGCGCCACGCCCGAACACCTCACCGACCGCTACTTCTGGTCCATCCCCGAGGAGGAGTTCCTGTGTGAGCCCCCGCTGATCACACGGCAGGCGGGGGGCCGGGCCCTGGTGGTGGAAGGCCAGGCGGTGAGCCTGCGCTGCCGAGCGGTGGGTGACCCCGAGCCGGTGGTGCACTGGGTGGCACCTGATGGGCGGCTGCTGGGGAACTCCAGCCGGACCCGGGTCCGGGGGGACGGGACGCTGGATGTGACCATCACCACCTTGAGGGACAGTGGCACCTTCACTTGTATCGCCTCCAATGCTGCTGGGGAAGCGACGGCGCCCGTGGAGGTGTGCGTGGTACCTCTGCCTCTGATGGCACCCCCGCCGGCTGCCCCGCCGCCTCTCACCGAGCCCGGCTCCTCTGACATCGCCACGCCGGGCAGACCAGGTGCCAACGATTCTGCGGCTGAGCGTCGGCTCGTGGCAGCCGAGCTCACCTCGAACTCCGTGCTCATCCGCTGGCCAGCCCAGAGGCCTGTGCCCGGAATACGCATGTACCAGGTTCAGTACAACAGTTCCGTTGATGACTCCCTCGTCTACAGGATGATCCCGTCCACCAGTCAGACCTTCCTGGTGAATGACCTGGCGGCGGGCCGTGCCTACGACTTGTGCGTGCTGGCGGTCTACGACGACGGGGCCACAGCGCTGCCGGCAACGCGAGTGGTGGGCTGTGTACAGTTCACCACCGCTGGGGATCCGGCGCCCTGCCGCCCGCTGAGGGCCCATTTCTTGGGCGGCACCATGATCATCGCCATCGGGGGCGTCATCGTCGCCTCGGTCCTCGTCTTCATCGTTCTGCTCATGATCCGCTATAAGGTGTATGGCGACGGGGACAGCCGCCGCGTCAAGGGCTCCAGGTCGCTCCCGCGGGTCAGCCACGTGTGCTCGCAGACCAACGGCGCAGGCACAGGCGCGGCACAGGCCCCGGCCCTGCCGGCCCAGGACCACTACGAGGCGCTGCGCGAGGTGGAGTCCCAGGCTGCCCCCGCCGTCGCCGTCGAGGCCAAGGCCATGGAGGCCGAGACGGCATCCGCGGAGCCGGAGGTGGTCCTTGGACGTTCTCTGGGCGGCTCGGCCACCTCGCTGTGCCTGCTGCCATCCGAGGAAACTTCCGGGGAGGAGTCTCGGGCCGCGGTGGGCCCTCGAAGGAGCCGATCCGGCGCCCTGGAGCCACCAACCTCGGCGCCCCCTACTCTAGCTCTAGTTCCTGGGGGAGCCGCGGCCCGGCCGAGGCCGCAGCAGCGCTATTCGTTCGACGGGGACTACGGGGCACTATTCCAGAGCCACAGTTACCCGCGCCGCGCCCGGCGGACAAAGCGCCACCGGTCCACGCCGCACCTGGACGGGGCTGGAGGGGGCGCGGCCGGGGAGGATGGAGACCTGGGGCTGGGCTCCGCCAGGGCGTGCCTGGCTTTCACCAGCACCGAGTGGATGCTGGAGAGTACCGTGTGA
Amino sequence
MAPGPFSSALLSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLILGNNQIRRVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGTGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGANDSAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDSLVYRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYKVYGDGDSRRVKGSRSLPRVSHVCSQTNGAGTGAAQAPALPAQDHYEALREVESQAAPAVAVEAKAMEAETASAEPEVVLGRSLGGSATSLCLLPSEETSGEESRAAVGPRRSRSGALEPPTSAPPTLALVPGGAAARPRPQQRYSFDGDYGALFQSHSYPRRARRTKRHRSTPHLDGAGGGAAGEDGDLGLGSARACLAFTSTEWMLESTV*