ENST00000589838.5 PRKCSH

Information
Transcript ID
ENST00000589838.5
Genome
hg19
Position
chr19:11,546,939-11,561,755
Strand
+
CDS length
1,587
Amino acid length
529
Gene symbol
PRKCSH
Gene type
protein-coding
Gene description
PRKCSH beta subunit of glucosidase II
Gene Entrez Gene ID
5589
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 11,546,939 11,547,017
2 11,547,210 11,547,326
3 11,548,697 11,548,792
4 11,548,888 11,548,945
5 11,552,055 11,552,172
6 11,553,201 11,553,330
7 11,556,204 11,556,288
8 11,557,087 11,557,165
9 11,557,889 11,557,975
10 11,558,254 11,558,412
11 11,558,508 11,558,604
12 11,559,037 11,559,106
13 11,559,355 11,559,444
14 11,559,729 11,559,803
15 11,559,891 11,559,990
16 11,560,081 11,560,243
17 11,561,461 11,561,755
CDS
Exon number Type Start Stop
1 CDS 11,546,939 11,547,017
2 CDS 11,547,210 11,547,326
3 CDS 11,548,697 11,548,792
4 CDS 11,548,888 11,548,945
5 CDS 11,552,055 11,552,172
6 CDS 11,553,201 11,553,330
7 CDS 11,556,204 11,556,288
8 CDS 11,557,087 11,557,165
9 CDS 11,557,889 11,557,975
10 CDS 11,558,254 11,558,412
11 CDS 11,558,508 11,558,604
12 CDS 11,559,037 11,559,106
13 CDS 11,559,355 11,559,444
14 CDS 11,559,729 11,559,803
15 CDS 11,559,891 11,559,990
16 CDS 11,560,081 11,560,227
Other genome
Genome Chromosome Start End Links
hg38 chr19 11,436,118 11,450,940 Link
CDS sequence
ATGCTGTTGCCGCTGCTGCTGCTGCTACCCATGTGCTGGGCCGTGGAGGTCAAGAGGCCCCGGGGCGTCTCCCTCACCAATCATCACTTCTACGATGAGTCCAAGCCTTTCACCTGCCTGGACGGTTCGGCCACCATCCCATTTGATCAGGTCAACGATGACTATTGCGACTGCAAAGATGGCTCTGACGAGCCAGGCACGGCTGCCTGTCCTAATGGCAGCTTCCACTGCACCAACACTGGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGATGGTGTTTGTGACTGCTGCGATGGAACAGACGAGTACAACAGCGGCGTCATCTGTGAGAACACCTGCAAAGAGAAGGGCCGTAAGGAGAGAGAGTCCCTGCAGCAGATGGCCGAGGTCACCCGCGAAGGGTTCCGTCTGAAGAAGATCCTTATTGAGGACTGGAAGAAGGCACGGGAGGAGAAGCAGAAAAAGCTCATTGAGCTACAGGCTGGGAAGAAGTCTCTGGAAGACCAGGTGGAGATGCTGCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGAGCAGCTGGCTGCTGCCAAGGCCCAACAGGAGCAGGAGCTGGCGGCTGATGCCTTCAAGGAGCTGGATGATGACATGGACGGGACGGTCTCGGTGACTGAGCTGCAGACTCACCCGGAGCTGGACACAGATGGGGATGGGGCGTTGTCAGAAGCGGAAGCTCAGGCCCTCCTCAGTGGGGACACACAGACAGACGCCACCTCTTTCTACGACCGCGTCTGGGCCGCCATCAGGGACAAGTACCGGTCCGAGGCACTGCCCACCGACCTTCCAGCACCTTCTGCCCCTGACTTGACGGAGCCCAAGGAGGAGCAGCCGCCAGTGCCCTCGTCGCCCACAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGCTGAAGAAGAGGAGGAGGAGGAGGATTCCGAGGAGGCCCCACCGCCACTGTCACCCCCGCAGCCGGCCAGCCCTGCTGAGGAAGACAAAATGCCGCCCTACGACGAGCAGACGCAGGCCTTCATCGATGCTGCCCAGGAGGCCCGCAACAAGTTCGAGGAGGCCGAGCGGTCGCTGAAGGACATGGAGGAGTCCATCAGGAACCTGGAGCAAGAGATTTCTTTTGACTTTGGCCCCAACGGGGAGTTTGCTTACCTGTACAGCCAGTGCTACGAGCTCACCACCAACGAATACGTCTACCGCCTCTGCCCCTTCAAGCTTGTCTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGCCTTGGCACCTGGGGCTCATGGATTGGCCCCGACCACGACAAGTTCAGTGCCATGAAGTATGAGCAAGGCACGGGCTGCTGGCAGGGCCCCAACCGCTCCACCACCGTGCGCCTCCTGTGCGGGAAAGAGACCATGGTGACCAGCACCACAGAGCCCAGTCGCTGCGAGTACCTCATGGAGCTGATGACGCCAGCCGCCTGCCCGGAGCCACCGCCTGAAGCACCCACCGAAGACGACCATGACGAGCTCTAG
Amino sequence
MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVKEEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPELDTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL*