ENST00000398452.6 SKA1

Information
Transcript ID
ENST00000398452.6
Genome
hg19
Position
chr18:47,901,410-47,918,617
Strand
+
CDS length
768
Amino acid length
256
Gene symbol
SKA1
Gene type
protein-coding
Gene description
spindle and kinetochore associated complex subunit 1
Gene Entrez Gene ID
220134
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 47,901,410 47,901,609
2 47,902,190 47,902,288
3 47,906,496 47,906,620
4 47,908,499 47,908,596
5 47,911,586 47,911,723
6 47,917,494 47,917,663
7 47,918,469 47,918,617
CDS
Exon number Type Start Stop
2 CDS 47,902,201 47,902,288
3 CDS 47,906,496 47,906,620
4 CDS 47,908,499 47,908,596
5 CDS 47,911,586 47,911,723
6 CDS 47,917,494 47,917,663
7 CDS 47,918,469 47,918,617
Other genome
Genome Chromosome Start End Links
hg38 chr18 50,375,040 50,392,247 Link
CDS sequence
ATGGCCTCGTCAGATCTGGAACAATTATGCTCTCATGTTAATGAAAAGATTGGCAATATTAAGAAAACCTTATCATTAAGAAACTGTGGCCAGGAACCTACCTTGAAAACTGTATTAAATAAAATAGGAGATGAGATCATTGTAATAAATGAACTTCTAAATAAATTGGAATTGGAAATTCAGTATCAAGAACAAACCAACAATTCACTCAAGGAACTCTGTGAATCTCTTGAAGAAGATTACAAAGACATAGAACATCTTAAAGAAAACGTTCCTTCCCATTTGCCTCAAGTAACAGTAACCCAGAGCTGTGTTAAGGGATCAGATCTTGATCCTGAAGAACCAATCAAAGTTGAAGAACCTGAACCCGTAAAGAAGCCTCCCAAAGAGCAAAGAAGTATTAAGGAAATGCCATTTATAACTTGTGATGAGTTCAATGGTGTTCCTTCGTACATGAAATCCCGCTTAACCTATAATCAAATTAATGATGTTATTAAAGAAATCAACAAGGCAGTAATTAGTAAATATAAAATCCTACATCAGCCAAAAAAGTCTATGAATTCTGTGACCAGAAATCTCTATCACAGATTTATTGATGAAGAAACGAAGGATACCAAAGGTCGTTATTTTATAGTGGAAGCTGACATAAAGGAGTTCACAACTTTGAAAGCTGACAAGAAGTTTCACGTGTTACTGAATATTTTACGACACTGCCGGAGGCTATCAGAGGTCCGAGGGGGAGGACTTACTCGTTATGTTATAACCTGA
Amino sequence
MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEEPEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILHQPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRRLSEVRGGGLTRYVIT*