ENST00000700530.1 NUP88
Information
- Transcript ID
- ENST00000700530.1
- Genome
- hg19
- Position
- chr17:5,280,386-5,323,484
- Strand
- -
- CDS length
- 1,974
- Amino acid length
- 658
- Gene symbol
- NUP88
- Gene type
- protein-coding
- Gene description
- nucleoporin 88
- Gene Entrez Gene ID
- 4927
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 18 | 5,280,386 | 5,280,509 |
| 17 | 5,287,697 | 5,287,820 |
| 16 | 5,290,028 | 5,290,146 |
| 15 | 5,290,304 | 5,290,430 |
| 14 | 5,290,706 | 5,290,786 |
| 13 | 5,290,925 | 5,290,990 |
| 12 | 5,291,099 | 5,291,224 |
| 11 | 5,292,122 | 5,292,280 |
| 10 | 5,294,881 | 5,294,982 |
| 9 | 5,298,211 | 5,298,301 |
| 8 | 5,302,872 | 5,302,970 |
| 7 | 5,307,419 | 5,307,566 |
| 6 | 5,308,377 | 5,308,563 |
| 5 | 5,312,053 | 5,312,229 |
| 4 | 5,314,023 | 5,314,109 |
| 3 | 5,317,329 | 5,317,454 |
| 2 | 5,319,833 | 5,320,002 |
| 1 | 5,323,328 | 5,323,484 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 18 | CDS | 5,280,429 | 5,280,509 |
| 17 | CDS | 5,287,697 | 5,287,820 |
| 16 | CDS | 5,290,028 | 5,290,146 |
| 15 | CDS | 5,290,304 | 5,290,430 |
| 14 | CDS | 5,290,706 | 5,290,786 |
| 13 | CDS | 5,290,925 | 5,290,990 |
| 12 | CDS | 5,291,099 | 5,291,224 |
| 11 | CDS | 5,292,122 | 5,292,280 |
| 10 | CDS | 5,294,881 | 5,294,982 |
| 9 | CDS | 5,298,211 | 5,298,301 |
| 8 | CDS | 5,302,872 | 5,302,970 |
| 7 | CDS | 5,307,419 | 5,307,566 |
| 6 | CDS | 5,308,377 | 5,308,563 |
| 5 | CDS | 5,312,053 | 5,312,229 |
| 4 | CDS | 5,314,023 | 5,314,109 |
| 3 | CDS | 5,317,329 | 5,317,454 |
| 2 | CDS | 5,319,833 | 5,319,906 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr17 | 5,377,091 | 5,420,164 | Link |
CDS sequence
ATGGTATTAGAATTACCTAAAAGATGGGGGAAGAATTCTGAATTTGAAGGTGGAAAATCAACAGTGAATTGTAGTACCACTCCAGTTGCGGAGAGATTTTTCACCAGTTCCACCTCTCTGACTCTAAAGCATGCTGCATGGTATCCAAGTGAAATCCTGGATCCCCACGTAGTGCTGTTAACATCAGACAACGTAATCAGAATTTACTCACTACGTGAGCCGCAGACACCCACTAACGTGATAATACTTTCAGAAGCCGAAGAGGAAAGTCTAGTACTCAATAAAGGAAGGGCGTATACCGCATCTCTAGGAGAGACAGCAGTTGCATTTGACTTTGGGCCATTGGCAGCAGTCCCAAAGACTCTATTTGGACAAAACGGCAAAGATGAAGTAGTGGCATACCCACTGTACATCTTATATGAAAATGGAGAGACTTTCCTGACATACATCAGTCTGTTACACAGCCCTGGAAATATTGGAAAGCTGTTGGGTCCATTGCCCATGCATCCTGCGGCTGAAGATAACTATGGTTATGATGCGTGTGCTGTACTCTGCTTACCCTGTGTCCCCAATATCTTAGTGATCGCTACTGAATCAGGAATGCTGTATCACTGTGTCGTGCTAGAAGGGGAAGAAGAAGATGACCACACGTCAGAAAAGTCCTGGGATTCCAGGATTGACCTCATTCCTTCTCTGTATGTGTTTGAATGTGTTGAGTTGGAGCTTGCTTTGAAACTGGCATCTGGAGAGGATGACCCTTTTGATTCTGACTTTTCTTGTCCAGTCAAACTTCATAGAGATCCCAAGTGTCCTTCAAGATATCACTGTACTCATGAAGCTGGTGTACATAGTGTTGGGCTAACTTGGATTCATAAACTTCACAAATTTCTTGGATCAGATGAAGAAGATAAGGATAGTTTACAGGAACTCTCTACAGAACAGAAATGCTTTGTTGAACACATCCTTTGTACGAAGCCATTGCCCTGCAGGCAGCCAGCTCCAATTCGAGGATTTTGGATTGTACCTGACATTCTGGGACCCACGATGATCTGCATCACCAGTACCTATGAATGCCTCATATGGCCGTTATTAAGTACAGTCCATCCAGCGTCTCCTCCCCTGCTTTGTACTCGAGAAGATGTTGAAGTGGCAGAGTCTCCCCTCCGTGTTCTGGCTGAAACCCCAGATTCCTTTGAAAAGCATATTAGAAGCATTTTGCAACGTAGTGTTGCCAATCCAGCATTTTTGAAAGCTTCTGAAAAGGACATAGCCCCTCCTCCTGAAGAATGCCTTCAGCTCCTCAGCAGAGCCACCCAGGTGTTCAGAGAGCAGTACATTCTCAAACAGGACTTGGCAAAGGAGGAGATTCAGCGGAGGGTCAAATTATTATGTGACCAAAAAAAGAAACAACTAGAAGATCTCAGTTATTGTCGAGAAGAGAGGAAAAGTCTGCGGGAAATGGCTGAGCGTTTAGCTGACAAATATGAGGAAGCTAAAGAAAAACAAGAGGATATCATGAACAGGATGAAAAAACTACTTCACAGTTTTCACTCTGAGCTCCCAGTTCTCTCTGATAGTGAGCGAGACATGAAGAAAGAATTACAGCTGATACCTGATCAACTTCGACATTTGGGCAATGCCATCAAACAGGTTACTATGAAAAAGGATTATCAACAGCAAAAGATGGAGAAGGTGTTGAGTCTTCCAAAACCCACCATTATTCTCAGTGCCTACCAGCGAAAGTGCATTCAGTCCATCCTGAAAGAGGAGCTCTTTCAGGTACCCTGCTGTTATGCAACCAGTCTCAAAAATGATTTGAAAACCATCTTACTTTTGAACCTCCTGGATGATGAATCCATCCACTGGATATTCCTGGGACAGTACTCTCAGCAGGAAAAGTATCTCAGCCTTCAGCTTTTCTTCTACGTGGTCTGCTGCTGTCCGCACATTAATGATGTCCTCACGGTATTTTAA
Amino sequence
MVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSLREPQTPTNVIILSEAEEESLVLNKGRAYTASLGETAVAFDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGETFLTYISLLHSPGNIGKLLGPLPMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDHTSEKSWDSRIDLIPSLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSTYECLIWPLLSTVHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRSVANPAFLKASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQQKMEKVLSLPKPTIILSAYQRKCIQSILKEELFQVPCCYATSLKNDLKTILLLNLLDDESIHWIFLGQYSQQEKYLSLQLFFYVVCCCPHINDVLTVF*