ENST00000561976.5 VPS9D1

Information
Transcript ID
ENST00000561976.5
Genome
hg19
Position
chr16:89,773,542-89,785,777
Strand
-
CDS length
1,686
Amino acid length
562
Gene symbol
VPS9D1
Gene type
protein-coding
Gene description
VPS9 domain containing 1
Gene Entrez Gene ID
9605
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
14 89,773,542 89,774,362
13 89,774,835 89,774,939
12 89,775,265 89,775,364
11 89,775,635 89,775,843
10 89,776,185 89,776,314
9 89,776,994 89,777,418
8 89,777,735 89,777,820
7 89,778,290 89,778,377
6 89,778,455 89,778,507
5 89,778,868 89,778,930
4 89,779,013 89,779,124
3 89,782,870 89,783,032
2 89,783,138 89,783,230
1 89,785,435 89,785,777
CDS
Exon number Type Start Stop
14 CDS 89,774,269 89,774,362
13 CDS 89,774,835 89,774,939
12 CDS 89,775,265 89,775,364
11 CDS 89,775,635 89,775,843
10 CDS 89,776,185 89,776,314
9 CDS 89,776,994 89,777,418
8 CDS 89,777,735 89,777,820
7 CDS 89,778,290 89,778,377
6 CDS 89,778,455 89,778,507
5 CDS 89,778,868 89,778,930
4 CDS 89,779,013 89,779,124
3 CDS 89,782,870 89,783,032
2 CDS 89,783,138 89,783,195
Other genome
Genome Chromosome Start End Links
hg38 chr16 89,707,134 89,719,369 Link
CDS sequence
ATGCTGAAGCTAGCACAGCAGTGTCTGGAGAGGGCCCAGTCGACGGCCGCCAAGCTTGGGAAAACACGCCTGAAGCCAACCATGCCTGCAGCTGCTCCCATTCCCCAGCCTGCCGGCCGACACCGCCGTGTATACTCCGATGAAGGAGGAAAGCTCTCTCCTTTTCTGCCACCCGAGATCTTCCAGAAGCTTCAGGGGGCAGAGTCACAAAGCTGTAAGAAAGAGCTGACGCCACTGGAGGAGGCCTCCCTGCAGAATCAGAAGCTGAAGGCTGCGTATGAGGCCCGAATGGCGCGGCTAGACCCCAGCCAGGCCATGCAGAAGACATCCCTGACCCTCTCTCTACAGCGGCAGATGATGGAGAACCTAGTGATTGCCAAAGCCCGGGAGGAGACACTCCAGAGAAAGATGGAGGAGCGCCGGCTGCGGCTCCAGGAGGCCGCCAACAGGAGGTTTTGCAGCCAAGTCGCCCTGACCCCGGAGGAACGGGAGCAGCGGGCCCTTTACGCCGCCATCCTGGAGTACGAACAGGACCATGACTGGCCGAAGCACTGGAAGGCCAAGCTCAAGAGGAATCCGGGGGACCTGTCACTCGTGACCAGCCTGGTCTCACACCTGCTCAGCCTCCCCGACCACCCGATCGCGCAGCTCCTGAGGCGGCTGCAGTGCTCCGTGTACAGCGCCCTGTATCCCGCCGTGAGCAGAGCAGCCGCGCCAGCCCCAGGCTGCTGCCCCCCGACCCCCAACCCCGGAAGCCGACGGCTGCGGCCCTCGCAGAGCCTCCATTGCATGCTGTCCCCGCCCGAGCCCAGCGCAGCCCCGCGGCCCCAGGACAGTCCCCCCACGCCCCCACTCCAACCCGGCCCCGTGGGGTCTCCCTCACCCCTGGGGGACACCGCATCTGGATTGCCAGACAAGGACAGCTCGTTCGAGGACCTGGAGCAGTTCCTGGGGACGTCTGAGCGGCAGGGCCGGGGCCGTGGGGTACAGCCGGAGCCCCAGCTGCAGCAGCTGAAGACCGCGGTGGAGGAGATCCACAATGCCGTAGACAGGCTGCTCTCGCTGACCCTTCTGGCCTTCGAAGGCCTAAACACAGCTGCCTCCAAGGACCGCTGCCTGGCCTGCATTGAGGAACCCTTTTTCTCCCCGCTGTGGCCTCTGCTGCTGGCCCTGTACAGGAGCGTGCACCGAGCCCGGGAGGCTGCCCTGAGCAGGAGCATGGAGCTCTACAGGAATGCACCCCCCACCGCCATTGGCATCCCCACCAAGCTCCTCCCCCAGAACCCTGAGGCCAAGGGGGCCACTGGCTACCCCTACTGCGCGGCGGCCCAGGAGCTCGGACTGCTGGTCCTGGAGAGCTGCCCCCAGAAGAAGCTGGAGTGCATAGTGCGGACCCTGCGGATCATCTGTGTCTGTGCGGAAGACTACTGCCCCACCCCAGAGGCCACACCCCAGGCCGGGCCCCCGCCCATCGCTGCAGCTGCCATTGGTGCCGATGACCTGCTGCCCATCCTGTCCTTCGTGGTGCTGAGGAGCGGCCTCCCTCAGCTGGTGTCGGAGTGCGCGGCCCTGGAGGAGTTCATCCACGAGGGGTACCTGATCGGAGAGGAGGGCTACTGCCTCACATCACTGCAGAGTGCCCTGAGCTACGTGGAGCTGCTGCCCCGGGGAGGCCTGGCCAAGTAG
Amino sequence
MLKLAQQCLERAQSTAAKLGKTRLKPTMPAAAPIPQPAGRHRRVYSDEGGKLSPFLPPEIFQKLQGAESQSCKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWKAKLKRNPGDLSLVTSLVSHLLSLPDHPIAQLLRRLQCSVYSALYPAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPVGSPSPLGDTASGLPDKDSSFEDLEQFLGTSERQGRGRGVQPEPQLQQLKTAVEEIHNAVDRLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELYRNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLPRGGLAK*