ENST00000378644.5 SYCE1L
Information
- Transcript ID
- ENST00000378644.5
- Genome
- hg19
- Position
- chr16:77,233,305-77,247,112
- Strand
- +
- CDS length
- 729
- Amino acid length
- 243
- Gene symbol
- SYCE1L
- Gene type
- protein-coding
- Gene description
- synaptonemal complex central element protein 1 like
- Gene Entrez Gene ID
- 100130958
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 77,233,305 | 77,233,409 |
| 2 | 77,240,338 | 77,240,397 |
| 3 | 77,242,107 | 77,242,166 |
| 4 | 77,242,362 | 77,242,436 |
| 5 | 77,242,994 | 77,243,041 |
| 6 | 77,243,314 | 77,243,368 |
| 7 | 77,245,110 | 77,245,173 |
| 8 | 77,246,027 | 77,246,096 |
| 9 | 77,246,179 | 77,246,266 |
| 10 | 77,246,471 | 77,246,543 |
| 11 | 77,246,754 | 77,247,112 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 77,233,349 | 77,233,409 |
| 2 | CDS | 77,240,338 | 77,240,397 |
| 3 | CDS | 77,242,107 | 77,242,166 |
| 4 | CDS | 77,242,362 | 77,242,436 |
| 5 | CDS | 77,242,994 | 77,243,041 |
| 6 | CDS | 77,243,314 | 77,243,368 |
| 7 | CDS | 77,245,110 | 77,245,173 |
| 8 | CDS | 77,246,027 | 77,246,096 |
| 9 | CDS | 77,246,179 | 77,246,266 |
| 10 | CDS | 77,246,471 | 77,246,543 |
| 11 | CDS | 77,246,754 | 77,246,828 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr16 | 77,199,408 | 77,213,215 | Link |
CDS sequence
ATGGCGGGGAAGCTGAAACCTCTGAATGTGGAGGCGCCAGAAGCTACTGAGGAGGCTGAAGGGCAAGCCAAGTCTTTGAAGACTGAAGACTTGCTGGCAATGGTGATAAAGCTGCAGAAAGAGGGAAGCCTGGAGCCACAGATAGAGGACCTGATTAGCCGGATTAATGATCTTCAGCAAGCAAAGAAGAAATCCAGTGAGGAACTGAGAGAGACCCACAGTCTCTGGGAGGCCCTGCATAGGGAATTAGACTCCTTGAATGGAGAGAAAGTGCACCTAGAGGAGGTCTTGGGCAAAAAGCAAGAGGCACTGAGGATCCTCCAGATGCACTGCCAAGAGAAGGAAAGCGAGGCTCAGAGGTTGGATGTCAGAGGACAGCTGGAGGATCTGATGGGCCAGCACAAGGACCTCTGGGAATTCCACATGCTGGAGCAGCGACTGGCCCGGGAGATCCGTGCCCTGGAGAGAAGCAAGGAGCAGCTGCTCTCGGAGAGGAGGCTGGTGCGCGCCAAGCTGCGGGAGGTGGAGCGGCGGCTGCACTCGCCGCCTGAGGTCGAGGGCGCCATGGCGGTGAATGACGGGCTGAAGGCGGAGCTGGAGATATTCGGGGAGCAGGTCCGGAGCGCCCCCGAGGTCGGGGCCGGCGAGGGAGAGGCCGGACCTGAGCTCCCCCGCGCTCGCGACGAGGAGGATCCCGAGCCGCCGGTGGCTGCCCCTGACGCCCTCTAG
Amino sequence
MAGKLKPLNVEAPEATEEAEGQAKSLKTEDLLAMVIKLQKEGSLEPQIEDLISRINDLQQAKKKSSEELRETHSLWEALHRELDSLNGEKVHLEEVLGKKQEALRILQMHCQEKESEAQRLDVRGQLEDLMGQHKDLWEFHMLEQRLAREIRALERSKEQLLSERRLVRAKLREVERRLHSPPEVEGAMAVNDGLKAELEIFGEQVRSAPEVGAGEGEAGPELPRARDEEDPEPPVAAPDAL*