ENST00000564277.5 LAT

Information
Transcript ID
ENST00000564277.5
Genome
hg19
Position
chr16:28,996,375-29,001,340
Strand
+
CDS length
699
Amino acid length
233
Gene symbol
LAT
Gene type
protein-coding
Gene description
linker for activation of T cells
Gene Entrez Gene ID
27040
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 28,996,375 28,996,547
2 28,996,697 28,996,838
3 28,997,034 28,997,061
4 28,997,175 28,997,209
5 28,997,456 28,997,537
6 28,997,706 28,997,767
7 28,997,861 28,997,890
8 28,997,978 28,998,035
9 28,998,120 28,998,214
10 29,000,848 29,000,910
11 29,001,095 29,001,160
12 29,001,254 29,001,340
CDS
Exon number Type Start Stop
2 CDS 28,996,739 28,996,838
3 CDS 28,997,034 28,997,061
4 CDS 28,997,175 28,997,209
5 CDS 28,997,456 28,997,537
6 CDS 28,997,706 28,997,767
7 CDS 28,997,861 28,997,890
8 CDS 28,997,978 28,998,035
9 CDS 28,998,120 28,998,214
10 CDS 29,000,848 29,000,910
11 CDS 29,001,095 29,001,160
12 CDS 29,001,254 29,001,333
Other genome
Genome Chromosome Start End Links
hg38 chr16 28,985,054 28,990,019 Link
CDS sequence
ATGGAGGAGGCCATCCTGGTCCCCTGCGTGCTGGGGCTCCTGCTGCTGCCCATCCTGGCCATGTTGATGGCACTGTGTGTGCACTGCCACAGACTGCCAGGCTCCTACGACAGCACATCCTCAGATAGTTTGTATCCAAGGGGCATCCAGTTCAAACGGCCTCACACGGTTGCCCCCTGGCCACCTGCCTACCCACCTGTCACCTCCTACCCACCCCTGAGCCAGCCAGACCTGCTCCCCATCCCATCCCCGCAGCCCCTTGGGGGCTCCCACCGGACGCCATCTTCCCGGCGGGATTCTGATGGTGCCAACAGTGTGGCGAGCTACGAGAACGAGGAACCAGCCTGTGAGGATGCGGATGAGGATGAGGACGACTATCACAACCCAGGCTACCTGGTGGTGCTTCCTGACAGCACCCCGGCCACTAGCACTGCTGCCCCATCAGCTCCTGCACTCAGCACCCCTGGCATCCGAGACAGTGCCTTCTCCATGGAGTCCATTGATGATTACGTGAACGTTCCGGAGAGCGGGGAGAGCGCAGAAGCGTCTCTGGATGGCAGCCGGGAGTATGTGAATGTGTCCCAGGAACTGCATCCTGGAGCGGCTAAGACTGAGCCTGCCGCCCTGAGTTCCCAGGAGGCAGAGGAAGTGGAGGAAGAGGGGGCTCCAGATTACGAGAATCTGCAGGAGCTGAACTGA
Amino sequence
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN*