ENST00000538135.5 RIMKLB
Information
- Transcript ID
- ENST00000538135.5
- Genome
- hg19
- Position
- chr12:8,852,442-8,929,786
- Strand
- +
- CDS length
- 1,161
- Amino acid length
- 387
- Gene symbol
- RIMKLB
- Gene type
- protein-coding
- Gene description
- ribosomal modification protein rimK like family member B
- Gene Entrez Gene ID
- 57494
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 8,852,442 | 8,853,210 |
| 2 | 8,866,407 | 8,866,637 |
| 3 | 8,902,458 | 8,902,688 |
| 4 | 8,904,553 | 8,904,639 |
| 5 | 8,906,486 | 8,906,689 |
| 6 | 8,925,917 | 8,929,786 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 8,866,463 | 8,866,637 |
| 3 | CDS | 8,902,458 | 8,902,688 |
| 4 | CDS | 8,904,553 | 8,904,639 |
| 5 | CDS | 8,906,486 | 8,906,689 |
| 6 | CDS | 8,925,917 | 8,926,380 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr12 | 8,699,846 | 8,777,190 | Link |
CDS sequence
ATGTGTAGTTCTGTGGCTGCCAAGTTGTGGTTTTTGACAGATCGTCGCATCAGGGAAGACTATCCTCAAAAAGAGATTTTACGAGCATTGAAGGCCAAATGTTGTGAGGAGGAACTGGACTTTAGGGCTGTGGTGATGGATGAGGTGGTGCTGACAATCGAGCAAGGAAACCTGGGTCTGCGGATCAATGGAGAGCTAATCACTGCCTACCCACAAGTGGTGGTAGTCAGAGTACCAACCCCTTGGGTGCAAAGTGATAGTGACATCACTGTTTTGCGCCATCTAGAGAAGATGGGATGTCGGTTAATGAACCGACCTCAAGCCATCCTGAACTGCGTTAATAAGTTCTGGACATTTCAAGAGTTGGCTGGCCATGGTGTTCCTCTGCCGGATACTTTCTCTTATGGTGGCCACGAAAATTTTGCTAAAATGATTGATGAGGCTGAAGTTCTGGAGTTCCCAATGGTAGTAAAGAATACGCGGGGTCACAGAGGTAAAGCTGTTTTCTTGGCTCGAGATAAGCACCATTTGGCTGATCTAAGCCATCTTATTCGCCATGAAGCGCCATACCTGTTCCAGAAGTATGTTAAAGAGTCTCATGGACGGGATGTACGTGTCATTGTCGTGGGAGGCCGTGTGGTTGGCACCATGTTACGTTGTTCAACAGATGGGAGAATGCAAAGCAACTGCTCATTAGGTGGTGTGGGGATGATGTGCTCATTGAGTGAACAAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGGATGGATGTGTGTGGCATTGATCTGCTGATGAAAGATGACGGCTCCTTCTGCGTCTGTGAGGCCAATGCAAATGTAGGTTTCATCGCCTTTGATAAGGCTTGTAATCTAGATGTAGCTGGTATCATAGCAGACTATGCCGCCTCCCTTCTACCCTCTGGCCGGCTCACCCGGCGTATGTCCCTGCTCTCCGTGGTGTCCACTGCCAGTGAGACTAGTGAGCCGGAGCTGGGTCCCCCAGCCAGCACTGCTGTTGACAACATGAGTGCAAGTTCCAGCTCTGTTGACAGCGACCCTGAAAGCACGGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGGCCTGTTCAACATGAACCAGCTGCTAGCCAATGAAATCAAACTACTGGTGGACTGA
Amino sequence
MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGLRINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPESTERELLTKLPGGLFNMNQLLANEIKLLVD*