ENST00000540113.5 C11orf54
Information
- Transcript ID
- ENST00000540113.5
- Genome
- hg19
- Position
- chr11:93,474,760-93,496,268
- Strand
- +
- CDS length
- 891
- Amino acid length
- 297
- Gene symbol
- C11orf54
- Gene type
- protein-coding
- Gene description
- chromosome 11 open reading frame 54
- Gene Entrez Gene ID
- 28970
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 93,474,760 | 93,474,894 |
| 2 | 93,483,512 | 93,483,610 |
| 3 | 93,486,848 | 93,486,921 |
| 4 | 93,487,102 | 93,487,203 |
| 5 | 93,488,376 | 93,488,552 |
| 6 | 93,490,482 | 93,490,631 |
| 7 | 93,492,908 | 93,493,024 |
| 8 | 93,494,681 | 93,496,268 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 93,483,514 | 93,483,610 |
| 3 | CDS | 93,486,848 | 93,486,921 |
| 4 | CDS | 93,487,102 | 93,487,203 |
| 5 | CDS | 93,488,376 | 93,488,552 |
| 6 | CDS | 93,490,482 | 93,490,631 |
| 7 | CDS | 93,492,908 | 93,493,024 |
| 8 | CDS | 93,494,681 | 93,494,854 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr11 | 93,741,594 | 93,763,102 | Link |
CDS sequence
ATGCAGAAGGGGTTAAAAGATAACTTTGCTGATGTCCAGGTCTCTGTAGTTGATTGCCCTGATTTGACTAAGGAACCCTTTACCTTTCCTGTAAAAGGCATCTGTGGGAAAACTAGAATTGCAGAAGTTGGAGGTGTGCCTTACTTATTGCCTCTTGTAAACCAAAAAAAAGTTTATGATCTGAATAAAATTGCAAAAGAAATCAAGCTGCCTGGAGCCTTTATTCTTGGAGCAGGAGCAGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGTTTATGCCAGTTATTCAGACAGAAAGTGAACACAAGCCTCCTGTAAATGGAAGTTACTTTGCCCATGTGAACCCTGCAGATGGAGGGTGCCTACTGGAGAAATACAGTGAGAAATGTCATGATTTTCAGTGTGCATTACTGGCTAATCTTTTTGCCAGTGAAGGCCAACCTGGCAAGGTAATTGAGGTGAAAGCCAAAAGAAGAACTGGACCACTTAACTTTGTGACTTGTATGAGAGAGACCCTGGAAAAACATTATGGAAATAAGCCTATAGGAATGGGAGGTACTTTCATAATTCAGAAGGGAAAAGTGAAGTCTCACATTATGCCTGCAGAATTTTCTTCCTGCCCCTTGAACTCTGATGAAGAAGTGAATAAATGGTTGCATTTTTATGAAATGAAAGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAGAGACCCAGGGTTTGATTTGCGACTGGAGCACACTCATTTTTTTAGTCGTCATGGAGAAGGTGGACACTACCATTATGACACTACTCCAGATATAGTGGAATATCTTGGATACTTCTTACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACGCATTCAATTGGGCGAGATTAA
Amino sequence
MQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKCHDFQCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD*