ENST00000298281.8 PCF11

Information
Transcript ID
ENST00000298281.8
Genome
hg19
Position
chr11:82,868,030-82,898,493
Strand
+
CDS length
4,668
Amino acid length
1,556
Gene symbol
PCF11
Gene type
protein-coding
Gene description
PCF11 cleavage and polyadenylation factor subunit
Gene Entrez Gene ID
51585
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 82,868,030 82,868,673
2 82,872,369 82,872,494
3 82,874,721 82,874,909
4 82,875,249 82,875,443
5 82,876,642 82,877,756
6 82,878,167 82,878,350
7 82,878,457 82,878,547
8 82,879,470 82,881,037
9 82,882,860 82,882,956
10 82,888,127 82,888,246
11 82,888,756 82,888,861
12 82,892,050 82,892,233
13 82,892,896 82,893,051
14 82,893,441 82,893,533
15 82,894,080 82,894,115
16 82,895,721 82,898,493
CDS
Exon number Type Start Stop
1 CDS 82,868,482 82,868,673
2 CDS 82,872,369 82,872,494
3 CDS 82,874,721 82,874,909
4 CDS 82,875,249 82,875,443
5 CDS 82,876,642 82,877,756
6 CDS 82,878,167 82,878,350
7 CDS 82,878,457 82,878,547
8 CDS 82,879,470 82,881,037
9 CDS 82,882,860 82,882,956
10 CDS 82,888,127 82,888,246
11 CDS 82,888,756 82,888,861
12 CDS 82,892,050 82,892,233
13 CDS 82,892,896 82,893,051
14 CDS 82,893,441 82,893,533
15 CDS 82,894,080 82,894,115
16 CDS 82,895,721 82,895,936
Other genome
Genome Chromosome Start End Links
hg38 chr11 83,156,988 83,187,451 Link
CDS sequence
ATGTCAGAGCAGACGCCGGCCGAGGCCGGTGCTGCGGGGGCCCGGGAGGACGCCTGTCGGGATTATCAGTCATCGCTCGAAGACCTGACCTTCAATAGCAAGCCGCACATCAATATGCTGACCATTCTAGCCGAGGAGAACCTGCCCTTCGCCAAGGAGATCGTCTCTCTCATCGAGGCCCAAACCGCCAAGGCTCCTTCCTCAGAGAAGCTTCCTGTTATGTACCTTATGGATTCTATTGTGAAAAACGTTGGAAGAGAGTATCTCACTGCCTTTACTAAAAATCTAGTTGCAACATTTATTTGTGTGTTTGAAAAGGTGGATGAAAATACTAGGAAAAGTTTATTTAAGTTACGTTCTACATGGGATGAAATATTCCCTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCATTAGATCCTGCTTGGCCTATTAAACCTCTACCCCCCAATGTGAATACGTCTAGCATCCATGTGAATCCTAAATTTTTAAATAAATCGCCCGAGGAGCCTTCAACACCTGGTACAGTGGTCAGTTCCCCTAGCATCTCCACTCCTCCAATTGTTCCTGATATACAAAAGAATCTTACACAAGAACAACTAATAAGGCAGCAGTTACTGGCAAAGCAAAAACAGTTGTTAGAACTTCAGCAGAAAAAGCTGGAGCTTGAGCTAGAGCAAGCTAAGGCACAGTTGGCAGTTTCTCTTAGTGTTCAGCAGGAAACATCCAATTTAGGTCCTGGATCTGCACCATCCAAATTACATGTTTCACAGATTCCCCCTATGGCAGTTAAAGCTCCTCATCAGGTTCCTGTGCAATCTGAGAAAAGCCGTCCAGGACCATCCTTACAAATTCAGGATTTAAAAGGAACTAACCGGGATCCTCGTCTGAACAGGATAAGCCAACATTCTCATGGAAAAGATCAGAGTCACAGGAAAGAATTTCTAATGAACACATTAAACCAGTCTGATACTAAGACAAGTAAAACTATACCCTCTGAAAAACTAAATTCATCCAAGCAAGAAAAAAGTAAATCAGGTGAAAAAATAACCAAGAAAGAACTTGACCAATTAGATTCTAAATCGAAATCGAAATCGAAATCACCCTCACCTTTGAAAAACAAATTATCTCACACAAAAGACTTGAAAAATCAAGAATCGGAAAGTATGAGGTTGTCTGATATGAACAAGAGAGATCCAAGATTAAAAAAACATCTTCAGGATAAGACCGATGGCAAAGATGATGATGTGAAAGAGAAGAGAAAAACTGCAGAAAAAAAGGATAAAGATGAGCACATGAAGTCATCCGAACACAGACTGGCTGGAAGTAGAAATAAAATCATAAATGGCATTGTACAAAAACAGGATACAATAACAGAAGAGTCAGAAAAACAGGGGACAAAACCAGGGAGATCGAGTACTAGAAAGCGATCAAGATCTCGATCACCCAAGTCTAGGTCACCAATTATACATTCCCCAAAGAGAAGAGATAGGCGGTCACCCAAACGAAGGCAAAGAAGTATGTCTCCAACATCGACACCTAAAGCTGGAAAGATTCGCCAATCTGGAGCTAAGCAGTCACATATGGAAGAGTTTACACCACCTTCTAGGGAAGACAGAAATGCTAAGAGAAGTACTAAACAGGATATTCGGGATCCAAGGCGAATGAAAAAGACTGAAGAGGAGCGACCACAAGAAACTACAAATCAGCATTCTACAAAGTCAGGCACTGAACCAAAGGAGAATGTAGAAAACTGGCAAAGTTCCAAGTCTGCCAAAAGATGGAAATCTGGTTGGGAAGAAAATAAAAGCTTACAACAGGTTGATGAACATAGTAAACCTCCTCATCTGAGGCATAGGGAGAGCTGGTCAAGCACTAAAGGAATTTTATCACCTCGAGCCCCAAAGCAGCAACAGCATCGATTAAGTGTAGATGCCAATCTTCAGATTCCTAAAGAGTTAACTCTTGCAAGCAAAAGAGAATTACTTCAAAAGACGAGTGAACGTTTAGCATCTGGTGAAATTACACAGGATGACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAGTATCAAGAAGGTGTGCGAGAAGAGCAGAGATCTCCATTCAATGATCGTTTTCCACTTAAGCGACCTCGATATGAAGATTCAGATAAACCATTTGTAGATAGTCCAGCATCAAGATTCGCCGGCCTGGATACAAATCAGCGACTTACAGCTTTAGCTGAAGACAGACCGTTATTTGATGGACCTAGTAGGCCATCAGTAGCAAGAGATGGCCCAACGAAGATGATTTTTGAAGGACCCAATAAATTAAGCCCTCGAATTGATGGACCTCCCACACCAGCTTCTCTTCGGTTTGATGGGTCACCAGGACAAATGGGGGGAGGAGGCCCTTTGAGATTTGAGGGGCCACAAGGTCAGCTAGGAGGTGGGTGTCCTTTGAGATTTGAAGGTCCTCCAGGACCAGTGGGGACACCTCTGCGGTTTGAGGGCCCAATTGGTCAAGCAGGAGGAGGTGGTTTTCGGTTTGAAGGTTCCCCTGGTCTGAGGTTTGAGGGATCTCCAGGTGGTTTGAGATTTGAGGGACCAGGAGGCCAGCCTGTGGGTGGTCTGAGGTTTGAGGGACATCGTGGTCAACCTGTGGGTGGTCTAAGGTTTGAGGGACCTCATGGTCAGCCTGTGGGTGGACTTAGATTTGATAATCCCCGAGGTCAGCCTGTAGGTGGACTTAGATTTGAGGGGGGTCATGGTCCATCAGGGGCTGCGATTAGGTTTGATGGACCTCATGGTCAGCCAGGAGGTGGAATCAGATTTGAGGGCCCTTTGCTACAGCAAGGGGTTGGAATGAGGTTTGAGGGCCCCCATGGTCAGTCAGTAGCTGGTCTGAGATTTGAGGGACAACATAATCAACTTGGTGGGAACCTTAGGTTTGAGGGTCCACATGGTCAGCCAGGGGTTGGTATCAGGTTTGAAGGCCCTTTAGTCCAACAAGGAGGTGGAATGAGGTTTGAGGGTCCTTCTGTACCAGGAGGTGGCCTGAGAATTGAAGGGCCTCTGGGTCAAGGTGGTCCAAGATTTGAAGGTTGTCATGCTTTAAGGTTTGATGGGCAGCCAGGTCAGCCGTCACTCTTGCCAAGATTTGATGGATTACATGGTCAGCCAGGTCCTAGATTTGAAAGGACTCCTGGTCAGCCAGGCCCTCAGAGGTTTGATGGACCACCTGGACAGCAGGTTCAACCCAGATTTGACGGTGTACCTCAAAGATTTGATGGTCCACAACATCAGCAAGCATCAAGGTTTGATATTCCTCTTGGTCTTCAAGGCACAAGATTTGACAATCATCCTTCACAAAGGCTTGAATCAGTATCTTTCAATCAGACTGGTCCATATAATGATCCACCTGGCAATGCTTTTAATGCCCCATCCCAAGGACTACAGTTCCAAAGACATGAACAAATATTTGATTCACCTCAAGGACCAAATTTTAATGGACCACATGGCCCTGGAAACCAGAGTTTCTCTAATCCACTTAACAGAGCTTCTGGACACTATTTTGATGAAAAAAATCTTCAGAGTTCTCAATTTGGAAACTTTGGCAATATACCTGCTCCAATGACAGTAGGAAATATTCAGGCATCTCAACAGGTTCTGAGTGGTGTTGCTCAGCCAGTAGCTTTTGGTCAAGGACAACAGTTTTTACCAGTTCATCCACAAAATCCTGGATTTGTTCAGAATCCTTCAGGAGCCCTCCCTAAGGCATATCCTGATAATCATCTCAGTCAGGTGGATGTAAATGAATTGTTTTCAAAATTGCTAAAAACAGGAATTCTCAAATTGTCCCAAACTGATTCAGCTACAACACAAGTAAGTGAAGTAACTGCTCAGCCTCCCCCTGAAGAGGAGGAAGATCAAAATGAAGATCAAGATGTTCCAGATCTTACTAATTTTACAGTTGAAGAATTGAAACAACGTTATGACAGTGTTATAAATCGACTGTACACTGGTATTCAGTGTTACTCTTGTGGAATGAGGTTTACAACATCACAGACAGATGTTTATGCAGATCATTTGGACTGGCATTATCGGCAAAATAGAACTGAAAAGGATGTTAGCCGAAAAGTCACTCATAGACGTTGGTACTACAGTTTAACAGACTGGATAGAATTTGAGGAGATAGCTGATCTGGAAGAACGGGCAAAGAGCCAGTTTTTTGAAAAGGTGCATGAAGAAGTTGTGCTCAAAACTCAAGAGGCTGCTAAAGAAAAAGAGTTCCAAAGTGTACCTGCTGGACCAGCTGGAGCAGTTGAGAGTTGTGAAATCTGTCAAGAACAATTTGAACAATACTGGGATGAAGAAGAGGAGGAATGGCATTTGAAAAATGCTATTAGAGTAGATGGAAAGATTTATCATCCATCATGTTATGAAGATTATCAAAATACATCTTCATTTGATTGTACACCATCTCCCAGCAAGACACCAGTTGAAAACCCCTTGAATATTATGTTGAACATTGTCAAAAACGAATTGCAGGAACCCTGTGACAGTCCCAAAGTTAAGGAAGAACGAATTGATACACCACCAGCTTGTACAGAGGAAAGCATAGCAACACCCTCTGAAATTAAAACAGAAAATGACACAGTCGAGTCAGTTTAA
Amino sequence
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIATPSEIKTENDTVESV*