ENST00000379756.3 SPEF1
Information
- Transcript ID
- ENST00000379756.3
- Genome
- hg38
- Position
- chr20:3,777,504-3,781,448
- Strand
- -
- CDS length
- 711
- Amino acid length
- 237
- Gene symbol
- SPEF1
- Gene type
- protein-coding
- Gene description
- sperm flagellar 1
- Gene Entrez Gene ID
- 25876
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 7 | 3,777,504 | 3,778,319 |
| 6 | 3,778,421 | 3,778,544 |
| 5 | 3,778,746 | 3,778,806 |
| 4 | 3,778,951 | 3,778,990 |
| 3 | 3,779,196 | 3,779,352 |
| 2 | 3,779,664 | 3,779,775 |
| 1 | 3,781,179 | 3,781,448 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 7 | CDS | 3,778,212 | 3,778,319 |
| 6 | CDS | 3,778,421 | 3,778,544 |
| 5 | CDS | 3,778,746 | 3,778,806 |
| 4 | CDS | 3,778,951 | 3,778,990 |
| 3 | CDS | 3,779,196 | 3,779,352 |
| 2 | CDS | 3,779,664 | 3,779,775 |
| 1 | CDS | 3,781,179 | 3,781,287 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr20 | 3,758,151 | 3,762,095 | Link |
CDS sequence
ATGGCGAGCAGCGTGGACGAGGAGGCGCTGCACCAGCTGTACCTGTGGGTAGACAACATCCCTCTGTCCCGGCCCAAGCGAAACCTCTCCCGGGACTTTAGCGATGGAGTCCTTGTTGCAGAGGTCATCAAGTTTTACTTCCCCAAGATGGTGGAGATGCACAATTATGTCCCCGCCAACTCTCTCCAGCAGAAGCTCAGCAACTGGGGTCATCTGAACAGGAAGGTACTGAAGAGGCTGAACTTTTCAGTACCGGATGACGTGATGCGCAAGATCGCGCAGTGCGCCCCAGGCGTGGTGGAGCTGGTGCTCATCCCGCTGAGGCAGCGCCTGGAGGAGAGGCAGAGGCGCAGGAAGCAGGGCGCCGGCTCCTTACAGGAGCTGGCTCCCCAGGATGGCAGTGGCTACATGGATGTGGGTGTATCCCAGAAGGCCCGAGGTGAAGGTGTCCCGGACCCCCAGGGAGGGGGTCAGCTCAGCTGGGACCGGCCGCCGGCGCCTCGGCCTCCAGCGTATAACCGGGCGTTGCAGGGCGACCCCAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGAGCTGTTGGCCTCTCAAGAGACCGTGCAGGTCCTGCAGATGAAGGTAAGGCGCCTGGAGCACCTGCTCCAGCTCAAGAATGTGCGGATCGAAGACCTCTCCCGGCGGCTCCAGCAGGCGGAGCGTAAGCAGCGGTGA
Amino sequence
MASSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEERQRRRKQGAGSLQELAPQDGSGYMDVGVSQKARGEGVPDPQGGGQLSWDRPPAPRPPAYNRALQGDPSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR*