ENST00000541970.6 PDCD2
Information
- Transcript ID
- ENST00000541970.6
- Genome
- hg19
- Position
- chr6:170,884,383-170,893,725
- Strand
- -
- CDS length
- 1,035
- Amino acid length
- 345
- Gene symbol
- PDCD2
- Gene type
- protein-coding
- Gene description
- programmed cell death 2
- Gene Entrez Gene ID
- 5134
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 6 | 170,884,383 | 170,886,805 |
| 5 | 170,887,945 | 170,888,058 |
| 4 | 170,889,090 | 170,889,193 |
| 3 | 170,892,145 | 170,892,276 |
| 2 | 170,892,593 | 170,892,835 |
| 1 | 170,893,387 | 170,893,725 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 6 | CDS | 170,886,647 | 170,886,805 |
| 5 | CDS | 170,887,945 | 170,888,058 |
| 4 | CDS | 170,889,090 | 170,889,193 |
| 3 | CDS | 170,892,145 | 170,892,276 |
| 2 | CDS | 170,892,593 | 170,892,835 |
| 1 | CDS | 170,893,387 | 170,893,669 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr6 | 170,575,295 | 170,584,637 | Link |
CDS sequence
ATGGCTGCCGCCGGGGCCAGGCCTGTGGAGCTGGGCTTCGCCGAGTCGGCGCCGGCGTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGCGGCCGGCATGGCTGGGCGCGGCCGGGCTGCCGGGGCCCCAGGCCCTGGCCTGCGAGCTGTGCGGCCGCCCGCTCTCCTTCCTGCTGCAGGTGTATGCGCCGCTGCCTGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCTCTTCTGCTGCCGCGAGCAGCCGTGCTGTGCCGGCCTGCGAGTTTTTAGGAATCAACTACCCAGGAAAAACGATTTTTACTCATATGAGCCACCTTCTGAGAATCCTCCCCCAGAAACAGGAGAATCAGTGTGTCTCCAGCTTAAGTCTGGTGCTCATCTCTGCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCACAAAGCATATTACTGCAGCAAGGAGCATCAGACCCTAGACTGGAGATTGGGACATAAGCAGGCTTGTGCACAACCAGATCATCTGGACCATATAATTCCAGACCACAACTTCCTTTTTCCAGAATTTGAAATTGTAATAGAAACAGAAGATGAGATTATGCCTGAGGTTGTGGAAAAGGAAGATTACTCAGAGATTATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTGGATTCCATGGCAAAACATGAATCCAGGGAAGATAAAATTTTTCAGAAGTTTAAAACTCAGATAGCCCTTGAACCAGAACAGATTCTTAGATATGGCAGAGGTATTGCCCCCATCTGGATTTCTGGTGAAAATATTCCTCAAGAAAAGGATATTCCAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATTCCAGGTCATGCCTCAGCTCCTAAACTACCTGAAGGCTGACAGACTGGGCAAGAGCATTGACTGGGGCATCCTGGCTGTCTTCACCTGTGCTGAGAGCTGCAGCTTGGGTACTGGCTATACAGAAGAATTTGTGTGGAAGCAGGATGTAACAGATACACCGTAA
Amino sequence
MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSFLLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCPCGAKRILEFQVMPQLLNYLKADRLGKSIDWGILAVFTCAESCSLGTGYTEEFVWKQDVTDTP*