ENST00000274382.9 LIX1
Information
- Transcript ID
- ENST00000274382.9
- Genome
- hg19
- Position
- chr5:96,427,571-96,478,315
- Strand
- -
- CDS length
- 849
- Amino acid length
- 283
- Gene symbol
- LIX1
- Gene type
- protein-coding
- Gene description
- limb and CNS expressed 1
- Gene Entrez Gene ID
- 167410
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 6 | 96,427,571 | 96,430,739 |
| 5 | 96,432,514 | 96,432,591 |
| 4 | 96,440,894 | 96,440,989 |
| 3 | 96,443,064 | 96,443,204 |
| 2 | 96,460,170 | 96,460,333 |
| 1 | 96,478,199 | 96,478,315 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 6 | CDS | 96,430,452 | 96,430,739 |
| 5 | CDS | 96,432,514 | 96,432,591 |
| 4 | CDS | 96,440,894 | 96,440,989 |
| 3 | CDS | 96,443,064 | 96,443,204 |
| 2 | CDS | 96,460,170 | 96,460,333 |
| 1 | CDS | 96,478,199 | 96,478,280 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr5 | 97,091,867 | 97,142,611 | Link |
CDS sequence
ATGGACAGAACCTTGGAATCTCTGAGACACATCATTGCCCAAGTCTTGCCTCACAGAGATCCGGCTCTAGTCTTCAAAGACTTGAACGTTGTGTCAATGTTACAGGAATTTTGGGAAAGCAAGCAGCAGCAGAAGGCTGCATTCCCAAGTGAAGGTGTGGTGGTCTATGAGTCACTGCCAGCTCCTGGGCCTCCCTTTGTGAGTTACGTGACCCTCCCAGGGGGAAGCTGTTTTGGCAACTTTCAGTGCTGCTTAAGTAGAGCCGAGGCCAGGCGGGATGCAGCTAAAGTGGCCCTGATCAACTCCCTCTTCAATGAGCTGCCCTCTCGCAGGATCACCAAGGAATTCATTATGGAAAGTGTTCAGGAAGCAGTAGCCTCCACCAGCGGCACCTTAGATGATGCAGATGACCCCAGCACCAGTGTTGGGGCCTATCACTACATGCTGGAGTCAAACATGGGGAAGACTATGCTGGAGTTTCAGGAGCTGATGACCATTTTCCAACTATTGCACTGGAATGGAAGCCTAAAAGCCCTTCGTGAAACAAAGTGTTCCCGACAGGAAGTCATCTCCTACTATTCTCAGTATTCTCTAGATGAAAAGATGCGCAGCCACATGGCCCTGGACTGGATCATGAAGGAGCGGGACTCACCAGGAATTGTCTCTCAAGAGCTACGAATGGCCCTGAGGCAGTTGGAGGAAGCCAGGAAAGCAGGACAAGAACTACGGTTTTACAAAGAAAAGAAAGAAATATTGAGCTTAGCCCTGACTCAGATCTGCAGTGACCCTGACACTTCCTCACCCAGTGATGATCAGCTGAGCCTTACGGCCCTGTGTGGCTATCACTAG
Amino sequence
MDRTLESLRHIIAQVLPHRDPALVFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSGTLDDADDPSTSVGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERDSPGIVSQELRMALRQLEEARKAGQELRFYKEKKEILSLALTQICSDPDTSSPSDDQLSLTALCGYH*