ENST00000597347.5 SOX2-OT
Information
- Transcript ID
- ENST00000597347.5
- Genome
- hg19
- Position
- chr3:180,892,678-181,417,832
- Strand
- +
- CDS length
- 0
- Amino acid length
- 0
- Gene symbol
- SOX2-OT
- Gene type
- ncRNA
- Gene description
- SOX2 overlapping transcript
- Gene Entrez Gene ID
- 347689
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 180,892,678 | 180,893,055 |
| 2 | 180,893,302 | 180,893,371 |
| 3 | 181,281,508 | 181,281,716 |
| 4 | 181,328,649 | 181,328,717 |
| 5 | 181,408,622 | 181,408,790 |
| 6 | 181,417,386 | 181,417,832 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr3 | 181,174,890 | 181,700,044 | Link |
CDS sequence
Amino sequence