ENST00000357246.4 MAP1LC3C
Information
- Transcript ID
- ENST00000357246.4
- Genome
- hg19
- Position
- chr1:242,158,792-242,162,400
- Strand
- -
- CDS length
- 444
- Amino acid length
- 148
- Gene symbol
- MAP1LC3C
- Gene type
- protein-coding
- Gene description
- microtubule associated protein 1 light chain 3 gamma
- Gene Entrez Gene ID
- 440738
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 4 | 242,158,792 | 242,159,687 |
| 3 | 242,161,816 | 242,161,922 |
| 2 | 242,162,078 | 242,162,133 |
| 1 | 242,162,253 | 242,162,400 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 4 | CDS | 242,159,465 | 242,159,687 |
| 3 | CDS | 242,161,816 | 242,161,922 |
| 2 | CDS | 242,162,078 | 242,162,133 |
| 1 | CDS | 242,162,253 | 242,162,310 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr1 | 241,995,490 | 241,999,098 | Link |
CDS sequence
ATGCCGCCTCCACAGAAAATCCCAAGCGTCAGACCCTTCAAGCAGAGGAAAAGCTTGGCAATCAGACAAGAGGAAGTTGCTGGAATCCGGGCAAAGTTCCCCAACAAAATCCCGGTGGTAGTGGAGCGCTACCCCAGGGAGACGTTCCTGCCCCCGCTGGACAAAACCAAGTTCCTGGTCCCGCAGGAGCTGACCATGACCCAGTTCCTCAGCATCATCCGGAGCCGCATGGTCCTGAGAGCCACGGAAGCCTTTTACTTGCTGGTGAACAACAAGAGCCTGGTCAGCATGAGCGCAACCATGGCAGAGATCTACAGAGACTACAAGGATGAGGATGGCTTCGTGTACATGACCTACGCCTCCCAGGAGACATTTGGCTGCCTGGAGTCAGCAGCCCCCAGGGATGGGAGCAGCCTTGAGGACAGACCCTGCAATCCTCTCTAG
Amino sequence
MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFGCLESAAPRDGSSLEDRPCNPL*