ENST00000367520.3 COLGALT2
Information
- Transcript ID
- ENST00000367520.3
- Genome
- hg19
- Position
- chr1:183,907,099-183,933,634
- Strand
- -
- CDS length
- 1,092
- Amino acid length
- 364
- Gene symbol
- COLGALT2
- Gene type
- protein-coding
- Gene description
- collagen beta(1-O)galactosyltransferase 2
- Gene Entrez Gene ID
- 23127
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 7 | 183,907,099 | 183,908,171 |
| 6 | 183,909,715 | 183,909,921 |
| 5 | 183,913,330 | 183,913,457 |
| 4 | 183,914,566 | 183,914,698 |
| 3 | 183,920,141 | 183,920,247 |
| 2 | 183,923,896 | 183,923,972 |
| 1 | 183,933,035 | 183,933,634 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 7 | CDS | 183,907,895 | 183,908,171 |
| 6 | CDS | 183,909,715 | 183,909,921 |
| 5 | CDS | 183,913,330 | 183,913,457 |
| 4 | CDS | 183,914,566 | 183,914,698 |
| 3 | CDS | 183,920,141 | 183,920,247 |
| 2 | CDS | 183,923,896 | 183,923,972 |
| 1 | CDS | 183,933,035 | 183,933,197 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr1 | 183,937,965 | 183,964,500 | Link |
CDS sequence
ATGTTTTCTGATTGTTGGCTTTGTCCCTCTCTTGGATCCTCAGGCATCCAGATGTACCTCTGCAACAGAGAGCACTATGGCTACCTGCCCATCCCCCTGAAGCCCCATCAGACACTGCAGGAAGACATCGAGAACCTCATCCATGTGCAGATTGAAGCAATGATTGACCGTCCTCCAATGGAACCCTCCCAGTATGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAGATTTTCATGATAAACCTCAAACGCAGAAAGGACAGGCGGGACCGGATGCTGCGCACACTGTATGAACAGGAGATTGAGGTCAAGATTGTCGAGGCTGTGGATGGAAAGGCACTCAACACAAGCCAGCTGAAGGCACTGAATATTGAAATGCTGCCTGGCTATCGAGATCCCTATTCCTCCAGGCCTCTAACAAGGGGTGAAATCGGCTGCTTTCTCAGCCACTACTCAGTCTGGAAAGAGGTAATTGATCGAGAGCTAGAGAAGACTCTTGTAATTGAAGACGATGTGCGTTTTGAGCATCAGTTTAAGAAGAAGCTGATGAAGCTGATGGATAACATTGACCAGGCTCAGCTGGACTGGGAACTGATTTATATTGGTAGGAAGAGGATGCAAGTAAAGGAGCCAGAGAAAGCAGTGCCCAATGTGGCAAACCTGGTCGAAGCCGACTATTCCTACTGGACCCTGGGCTACGTCATCTCTCTGGAAGGAGCACAGAAGCTGGTTGGAGCCAATCCTTTTGGGAAGATGCTGCCAGTGGATGAGTTTCTGCCAGTCATGTACAACAAGCATCCCGTAGCCGAGTACAAGGAGTATTATGAATCCAGGGACCTGAAAGCCTTCTCTGCAGAACCCTTGCTCATCTACCCTACGCACTACACAGGCCAGCCGGGGTACCTGAGTGACACGGAGACCTCCACCATCTGGGACAATGAGACAGTGGCCACCGACTGGGATAGGACACATGCCTGGAAGTCCCGGAAGCAAAGCCGCATCTACAGCAATGCCAAGAACACAGAGGCCCTGCCACCGCCAACCTCCCTGGACACTGTGCCTTCAAGGGATGAGCTATGA
Amino sequence
MFSDCWLCPSLGSSGIQMYLCNREHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQYVSVVPKYPDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQLDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGANPFGKMLPVDEFLPVMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVATDWDRTHAWKSRKQSRIYSNAKNTEALPPPTSLDTVPSRDEL*