ENST00000649786.1 COLGALT2

Information
Transcript ID
ENST00000649786.1
Genome
hg19
Position
chr1:183,898,988-184,006,863
Strand
-
CDS length
1,665
Amino acid length
555
Gene symbol
COLGALT2
Gene type
protein-coding
Gene description
collagen beta(1-O)galactosyltransferase 2
Gene Entrez Gene ID
23127
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
12 183,898,988 183,899,423
11 183,909,715 183,909,921
10 183,913,330 183,913,457
9 183,914,566 183,914,698
8 183,920,141 183,920,247
7 183,923,896 183,923,972
6 183,933,035 183,933,154
5 183,938,403 183,938,607
4 183,942,750 183,942,884
3 183,944,231 183,944,348
2 183,947,544 183,947,654
1 184,006,229 184,006,863
CDS
Exon number Type Start Stop
12 CDS 183,899,363 183,899,423
11 CDS 183,909,715 183,909,921
10 CDS 183,913,330 183,913,457
9 CDS 183,914,566 183,914,698
8 CDS 183,920,141 183,920,247
7 CDS 183,923,896 183,923,972
6 CDS 183,933,035 183,933,154
5 CDS 183,938,403 183,938,607
4 CDS 183,942,750 183,942,884
3 CDS 183,944,231 183,944,348
2 CDS 183,947,544 183,947,654
1 CDS 184,006,229 184,006,491
Other genome
Genome Chromosome Start End Links
hg38 chr1 183,929,854 184,037,729 Link
CDS sequence
ATGGCTGCGCGCCCTGCTGCCACCCTCGCCTGGTCGCTACTGCTCCTCTCCTCAGCCCTGCTCCGCGAAGGCTGCCGAGCGCGCTTCGTCGCCGAGCGGGACTCGGAGGACGACGGAGAGGAGCCGGTGGTTTTCCCGGAGTCGCCCCTGCAGAGCCCCACGGTGCTCGTGGCGGTCCTCGCCCGCAACGCGGCGCACACGCTGCCGCACTTCCTCGGCTGCCTGGAGCGGCTGGACTACCCCAAGAGCAGGATGGCCATCTGGGCAGCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTATCACTATGTGGAGTGGAGGCCTATGGATGAACCAGAGTCTTACCCTGATGAAATTGGACCAAAGCACTGGCCAACCTCCCGGTTTGCCCATGTGATGAAACTACGACAGGCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGACTACATTCTGTTCATAGATGTTGACAATTTCCTGACTAATCCACAGACCCTCAATCTACTGATTGCAGAAAACAAAACTATTGTGGCCCCCATGCTGGAGTCTCGGGGCCTGTATTCTAATTTCTGGTGCGGAATCACCCCTAAGGGCTTCTATAAGAGGACCCCAGACTACGTTCAGATTCGAGAATGGAAGAGGACAGGCTGCTTCCCCGTCCCCATGGTCCACTCCACCTTCCTAATTGACCTCAGGAAGGAGGCCTCGGACAAGCTGACTTTCTACCCCCCACACCAGGACTACACCTGGACCTTTGATGACATCATTGTCTTTGCCTTCTCCAGCAGGCAAGCAGGCATCCAGATGTACCTCTGCAACAGAGAGCACTATGGCTACCTGCCCATCCCCCTGAAGCCCCATCAGACACTGCAGGAAGACATCGAGAACCTCATCCATGTGCAGATTGAAGCAATGATTGACCGTCCTCCAATGGAACCCTCCCAGTATGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAGATTTTCATGATAAACCTCAAACGCAGAAAGGACAGGCGGGACCGGATGCTGCGCACACTGTATGAACAGGAGATTGAGGTCAAGATTGTCGAGGCTGTGGATGGAAAGGCACTCAACACAAGCCAGCTGAAGGCACTGAATATTGAAATGCTGCCTGGCTATCGAGATCCCTATTCCTCCAGGCCTCTAACAAGGGGTGAAATCGGCTGCTTTCTCAGCCACTACTCAGTCTGGAAAGAGGTAATTGATCGAGAGCTAGAGAAGACTCTTGTAATTGAAGACGATGTGCGTTTTGAGCATCAGTTTAAGAAGAAGCTGATGAAGCTGATGGATAACATTGACCAGGCTCAGCTGGACTGGGAACTGATTTATATTGGTAGGAAGAGGATGCAAGTAAAGGAGCCAGAGAAAGCAGTGCCCAATGTGGCAAACCTGGTCGAAGCCGACTATTCCTACTGGACCCTGGGCTACGTCATCTCTCTGGAAGGAGCACAGAAGCTGGTTGGAGCCAATCCTTTTGGGAAGATGCTGCCAGTGGATGAGTTTCTGCCAGTCATGTACAACAAGCATCCCGTCCTCCTCTCAAGTCCTCACTGCCATCTCTTCCAAACACTTTCTGATGACTGCCAACGGTGA
Amino sequence
MAARPAATLAWSLLLLSSALLREGCRARFVAERDSEDDGEEPVVFPESPLQSPTVLVAVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEIFREWLKNVQRLYHYVEWRPMDEPESYPDEIGPKHWPTSRFAHVMKLRQAALRTAREKWSDYILFIDVDNFLTNPQTLNLLIAENKTIVAPMLESRGLYSNFWCGITPKGFYKRTPDYVQIREWKRTGCFPVPMVHSTFLIDLRKEASDKLTFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCNREHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQYVSVVPKYPDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQLDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGANPFGKMLPVDEFLPVMYNKHPVLLSSPHCHLFQTLSDDCQR*