ENST00000389386.8 VPS9D1

Information
Transcript ID
ENST00000389386.8
Genome
hg38
Position
chr16:89,707,134-89,720,898
Strand
-
CDS length
1,896
Amino acid length
632
Gene symbol
VPS9D1
Gene type
protein-coding
Gene description
VPS9 domain containing 1
Gene Entrez Gene ID
9605
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
15 89,707,134 89,707,954
14 89,708,427 89,708,531
13 89,708,857 89,708,956
12 89,709,227 89,709,435
11 89,709,777 89,709,906
10 89,710,586 89,711,010
9 89,711,327 89,711,412
8 89,711,882 89,711,969
7 89,712,047 89,712,099
6 89,712,460 89,712,522
5 89,712,605 89,712,716
4 89,716,462 89,716,624
3 89,716,730 89,716,822
2 89,719,027 89,719,102
1 89,720,763 89,720,898
CDS
Exon number Type Start Stop
15 CDS 89,707,861 89,707,954
14 CDS 89,708,427 89,708,531
13 CDS 89,708,857 89,708,956
12 CDS 89,709,227 89,709,435
11 CDS 89,709,777 89,709,906
10 CDS 89,710,586 89,711,010
9 CDS 89,711,327 89,711,412
8 CDS 89,711,882 89,711,969
7 CDS 89,712,047 89,712,099
6 CDS 89,712,460 89,712,522
5 CDS 89,712,605 89,712,716
4 CDS 89,716,462 89,716,624
3 CDS 89,716,730 89,716,822
2 CDS 89,719,027 89,719,102
1 CDS 89,720,763 89,720,861
Other genome
Genome Chromosome Start End Links
hg19 chr16 89,773,542 89,787,306 Link
CDS sequence
ATGGCCGCTGCGGCCGGGGACGGCACGGTGAAGCCGCTGCAGAGCGCCATGAAGCTTGCCAACGGGGCCATCGAGCTGGACACCGGCAACCGGCCCCGGGAGGCATACACGGAATACCTGAGGAGCATCCACTATATCTCCCAGGTGTTACTAGAAGAAGTGGAAACCACTAAAGAAGCTGGGGAAACTGTGCCCCCCGACACCTCCAAGATGCTGAAGCTAGCACAGCAGTGTCTGGAGAGGGCCCAGTCGACGGCCGCCAAGCTTGGGAAAACACGCCTGAAGCCAACCATGCCTGCAGCTGCTCCCATTCCCCAGCCTGCCGGCCGACACCGCCGTGTATACTCCGATGAAGGAGGAAAGCTCTCTCCTTTTCTGCCACCCGAGATCTTCCAGAAGCTTCAGGGGGCAGAGTCACAAAGCTGTAAGAAAGAGCTGACGCCACTGGAGGAGGCCTCCCTGCAGAATCAGAAGCTGAAGGCTGCGTATGAGGCCCGAATGGCGCGGCTAGACCCCAGCCAGGCCATGCAGAAGACATCCCTGACCCTCTCTCTACAGCGGCAGATGATGGAGAACCTAGTGATTGCCAAAGCCCGGGAGGAGACACTCCAGAGAAAGATGGAGGAGCGCCGGCTGCGGCTCCAGGAGGCCGCCAACAGGAGGTTTTGCAGCCAAGTCGCCCTGACCCCGGAGGAACGGGAGCAGCGGGCCCTTTACGCCGCCATCCTGGAGTACGAACAGGACCATGACTGGCCGAAGCACTGGAAGGCCAAGCTCAAGAGGAATCCGGGGGACCTGTCACTCGTGACCAGCCTGGTCTCACACCTGCTCAGCCTCCCCGACCACCCGATCGCGCAGCTCCTGAGGCGGCTGCAGTGCTCCGTGTACAGCGCCCTGTATCCCGCCGTGAGCAGAGCAGCCGCGCCAGCCCCAGGCTGCTGCCCCCCGACCCCCAACCCCGGAAGCCGACGGCTGCGGCCCTCGCAGAGCCTCCATTGCATGCTGTCCCCGCCCGAGCCCAGCGCAGCCCCGCGGCCCCAGGACAGTCCCCCCACGCCCCCACTCCAACCCGGCCCCGTGGGGTCTCCCTCACCCCTGGGGGACACCGCATCTGGATTGCCAGACAAGGACAGCTCGTTCGAGGACCTGGAGCAGTTCCTGGGGACGTCTGAGCGGCAGGGCCGGGGCCGTGGGGTACAGCCGGAGCCCCAGCTGCAGCAGCTGAAGACCGCGGTGGAGGAGATCCACAATGCCGTAGACAGGCTGCTCTCGCTGACCCTTCTGGCCTTCGAAGGCCTAAACACAGCTGCCTCCAAGGACCGCTGCCTGGCCTGCATTGAGGAACCCTTTTTCTCCCCGCTGTGGCCTCTGCTGCTGGCCCTGTACAGGAGCGTGCACCGAGCCCGGGAGGCTGCCCTGAGCAGGAGCATGGAGCTCTACAGGAATGCACCCCCCACCGCCATTGGCATCCCCACCAAGCTCCTCCCCCAGAACCCTGAGGCCAAGGGGGCCACTGGCTACCCCTACTGCGCGGCGGCCCAGGAGCTCGGACTGCTGGTCCTGGAGAGCTGCCCCCAGAAGAAGCTGGAGTGCATAGTGCGGACCCTGCGGATCATCTGTGTCTGTGCGGAAGACTACTGCCCCACCCCAGAGGCCACACCCCAGGCCGGGCCCCCGCCCATCGCTGCAGCTGCCATTGGTGCCGATGACCTGCTGCCCATCCTGTCCTTCGTGGTGCTGAGGAGCGGCCTCCCTCAGCTGGTGTCGGAGTGCGCGGCCCTGGAGGAGTTCATCCACGAGGGGTACCTGATCGGAGAGGAGGGCTACTGCCTCACATCACTGCAGAGTGCCCTGAGCTACGTGGAGCTGCTGCCCCGGGGAGGCCTGGCCAAGTAG
Amino sequence
MAAAAGDGTVKPLQSAMKLANGAIELDTGNRPREAYTEYLRSIHYISQVLLEEVETTKEAGETVPPDTSKMLKLAQQCLERAQSTAAKLGKTRLKPTMPAAAPIPQPAGRHRRVYSDEGGKLSPFLPPEIFQKLQGAESQSCKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWKAKLKRNPGDLSLVTSLVSHLLSLPDHPIAQLLRRLQCSVYSALYPAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPVGSPSPLGDTASGLPDKDSSFEDLEQFLGTSERQGRGRGVQPEPQLQQLKTAVEEIHNAVDRLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELYRNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLPRGGLAK*