ENST00000422202.5 COL20A1

Information
Transcript ID
ENST00000422202.5
Genome
hg38
Position
chr20:63,295,040-63,334,851
Strand
+
CDS length
3,894
Amino acid length
1,298
Gene symbol
COL20A1
Gene type
protein-coding
Gene description
collagen type XX alpha 1 chain
Gene Entrez Gene ID
57642
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 63,295,040 63,295,189
2 63,297,910 63,298,020
3 63,305,417 63,305,560
4 63,305,881 63,306,060
5 63,307,490 63,307,648
6 63,307,971 63,308,090
7 63,308,542 63,308,706
8 63,309,333 63,309,497
9 63,309,758 63,309,915
10 63,310,381 63,310,510
11 63,311,394 63,311,539
12 63,311,625 63,311,748
13 63,311,916 63,312,055
14 63,312,420 63,312,549
15 63,312,792 63,312,934
16 63,313,117 63,313,249
17 63,313,743 63,313,891
18 63,314,072 63,314,201
19 63,315,404 63,315,439
20 63,316,553 63,316,691
21 63,319,058 63,319,200
22 63,319,487 63,319,596
23 63,320,039 63,320,197
24 63,320,291 63,320,368
25 63,321,013 63,321,099
26 63,322,058 63,322,111
27 63,325,441 63,325,494
28 63,325,668 63,325,721
29 63,326,096 63,326,149
30 63,326,752 63,326,823
31 63,327,952 63,327,987
32 63,328,079 63,328,145
33 63,328,331 63,328,498
34 63,329,585 63,329,661
35 63,330,720 63,334,851
CDS
Exon number Type Start Stop
1 CDS 63,295,108 63,295,189
2 CDS 63,297,910 63,298,020
3 CDS 63,305,417 63,305,560
4 CDS 63,305,881 63,306,060
5 CDS 63,307,490 63,307,648
6 CDS 63,307,971 63,308,090
7 CDS 63,308,542 63,308,706
8 CDS 63,309,333 63,309,497
9 CDS 63,309,758 63,309,915
10 CDS 63,310,381 63,310,510
11 CDS 63,311,394 63,311,539
12 CDS 63,311,625 63,311,748
13 CDS 63,311,916 63,312,055
14 CDS 63,312,420 63,312,549
15 CDS 63,312,792 63,312,934
16 CDS 63,313,117 63,313,249
17 CDS 63,313,743 63,313,891
18 CDS 63,314,072 63,314,201
19 CDS 63,315,404 63,315,439
20 CDS 63,316,553 63,316,691
21 CDS 63,319,058 63,319,200
22 CDS 63,319,487 63,319,596
23 CDS 63,320,039 63,320,197
24 CDS 63,320,291 63,320,368
25 CDS 63,321,013 63,321,099
26 CDS 63,322,058 63,322,111
27 CDS 63,325,441 63,325,494
28 CDS 63,325,668 63,325,721
29 CDS 63,326,096 63,326,149
30 CDS 63,326,752 63,326,823
31 CDS 63,327,952 63,327,987
32 CDS 63,328,079 63,328,145
33 CDS 63,328,331 63,328,498
34 CDS 63,329,585 63,329,658
Other genome
Genome Chromosome Start End Links
hg19 chr20 61,926,392 61,966,203 Link
CDS sequence
ATGAGCTCCGGAGACCCTGCACACCTCGGCCTCTGCCTCTGGCTGTGGCTGGGCGCCACCCTGGGAAGAGAGCAAGTTCAAGCAAGCGGTCTCCTGAGGCTGGCTGTGCTGCCTGAGGACCGGCTGCAGATGAAGTGGAGAGAGTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGCCCATGGCAGGGGACTCGGAACAGGAGGTGATACTGACCACCAAGACCCCTAAGGCCACAGTGGGGGGCCTGAGCCCCTCCAAGGGCTACACCTTGCAGATCTTCGAGCTCACTGGCTCTGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGATTGAGGATCTGAAGAGTAGCTCCCTGGACAGGAGCAGCCAGAGGCCCCTCGGCTCTGGAGCCCCGGAGCCCACCCCCTCCCACACGGGGAGCCCAGACCCTGAGCAGGCTTCTGAGCCCCAAGTTGCCTTCACACCAAGCCAGGATCCGCGCACTCCTGGTGGGTCAGAGTGGAGAGAGACCGGCCCCCAGTTCCGCTGCCTGCCCCCCGTGCCTGCTGACATGGTCTTCCTGGTGGACGGGTCCTGGAGCATTGGCCACAGTCACTTCCAGCAGGTCAAGGACTTCCTGGCCAGTGTCATCGCACCCTTTGAAATCGGGCCGGATAAGGTCCAAGTAGGCCTGACTCAGTACAGCGGGGATGCTCAGACTGAGTGGGACCTGAACTCCCTCAGCACCAAGGAACAGGTGCTGGCAGCTGTGCGCCGCCTCCGCTACAAGGGGGGGAACACGTTCACAGGCCTTGCCCTGACCCACGTGCTGGGGCAGAACCTGCAGCCGGCGGCTGGCCTCCGTCCAGAGGCAGCCAAGGTGGTGATTCTGGTGACGGACGGCAAGTCCCAGGACGATGTGCACACTGCTGCCCGTGTCCTCAAGGACCTGGGCGTGAACGTCTTCGCTGTGGGTGTGAAGAACGCCGATGAGGCTGAGCTGAGGCTCCTGGCGTCCCCGCCGAGGGACATCACCGTCCACAGCGTGCTGGACTTCCTGCAGCTCGGCGCGCTGGCTGGCCTGCTCAGCCGTCTCATCTGCCAGAGGCTCCAGGGTGGGAGCCCGCGGCAGGGCCCAGCAGCGGCTCCAGCCCTGGACACCCTCCCTGCCCCCACCAGCCTGGTCCTGAGCCAGGTGACCTCCTCCAGCATCCGCCTGTCCTGGACTCCAGCCCCCCGGCACCCCCTCAAGTATCTGATCGTTTGGCGAGCCTCTAGAGGTGGCACCCCCAGGGAGGTGGTGGTGGAGGGACCCGCCGCCTCCACGGAGCTGCACAACCTGGCCTCCCGCACAGAGTACCTGGTCTCCGTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGGCCTGGTGACCACAGCACCTCTGCCTCCGCCCCGGGCGCTGACCCTGGCCGCAGTGACGCCCAGAACCGTCCACCTCACCTGGCAGCCCTCGGCCGGGGCCACCCACTACCTGGTGCGATGTTCTCCTGCTTCCCCCAAGGGTGAAGAGGAGGAGCGAGAGGTGCAGGTCGGGCGGCCCGAGGTGCTGCTGGATGGCCTGGAACCTGGCAGGGACTATGAGGTCTCGGTGCAGAGCCTGCGAGGCCCTGAGGGCAGCGAGGCCCGGGGCATCCGTGCCAGGACCCCCACCCTGGCCCCCCCGAGACACCTGGGCTTCTCAGACGTGAGCCACGACGCGGCACGAGTGTTCTGGGAGGGTGCCCCGAGGCCTGTGCGCCTGGTCAGGGTCACCTATGTGTCCAGCGAGGGTGGACACTCGGGGCAGACAGAGGCTCCTGGGAACGCCACCTCGGCCACGCTGGGGCCTCTCTCTTCCTCCACCACCTACACTGTCCGTGTCACCTGCCTCTACCCTGGGGGTGGCTCCTCTACGCTGACTGGCCGGGTGACCACCAAGAAAGCTCCCAGCCCAAGCCAGCTGTCCATGACGGAGCTGCCAGGGGATGCAGTCCAGCTGGCGTGGGTGGCCGCAGCCCCGTCTGGCGTGCTTGTCTACCAGATCACGTGGACGCCCCTGGGAGAGGGGAAGGCTCACGAGATCTCTGTCCCAGGGAACCTCGGCACGGCCGTCCTGCCTGGCCTAGGGAGGCACACAGAGTACGACGTCACCATCTTGGCCTACTACAGGGACGGGGCCCGCAGTGACCCTGTGTCCCTCCGCTATACCCCCTCCACGGTGAGCAGGAGCCCACCCTCCAACCTGGCCCTGGCCTCGGAGACCCCCGACAGCCTGCAGGTCAGCTGGACGCCCCCGCTTGGCCGCGTGCTCCATTACTGGCTCACCTACGCCCCCGCCTCTGGCTTGGGACCCGAGAAATCCGTCTCTGTGCCAGGAGCCAGGAGCCACGTGACACTGCCCGACCTGCAGGCAGCCACGAAGTACAGGGTCCTGGTCTCAGCTATCTATGCAGCAGGCAGGAGTGAGGCTGTGTCTGCCACGGGCCAGACAGCCTGCCCAGCCCTCCGCCCTGACGGCTCCCTCCCAGGGTTTGACCTGATGGTGGCCTTCAGCCTGGTGGAAAAGGCTTATGCGTCCATCCGGGGCGTGGCCATGGAGCCCTCTGCCTTCGGTGGGACCCCGACCTTCACGCTCTTCAAGGACGCCCAGCTGACAAGACGGGTCAGTGACGTCTACCCAGCCCCCCTACCTCCAGAGCACACCATCGTCTTCCTTGTGCGCCTACTTCCCGAGACACCCCGTGAGGCCTTCGCGCTGTGGCAGATGACAGCCGAGGACTTCCAGCCCCTCCTTGGGGTTCTGCTGGATGCCGGGAAGAAGTCCCTGACCTACTTCCACCGTGACCCCAGGGCTGCCTTGCAGGAGGCCACCTTCGACCCGCAGGAAGTGAGGAAGATTTTCTTCGGGAGCTTCCACAAGGTGCACGTGGCTGTGGGCCGCTCCAAGGTCAGGCTCTATGTGGACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGGCAGCCCACCCGCTGCGGGCTTCGTCACGCTGGGGAGGCTGGCCAAGGCCAGGGGCCCCCGGAGCAGTTCGGCCGCGTTTCAGCTCCAGATGCTGCAGATCGTGTGCAGTGACACCTGGGCCGATGAGGACCGGTGCTGTGAGCTCCCTGCCTCGAGGGATGGAGAGACCTGCCCCGCCTTCGTGTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAGGACCTCAAGGACCCCCAGGCCTCCCTGGGAGGAATGGCACCCCAGGAGAGCAGGGCTTCCCAGGGCCCAGGGGTCCACCAGGGGTCAAAGGAGAGAAGGGAGACCATGGGCTTCCAGGCTTGCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGAGAGTTGGCCTCCAGGGACCAAAGGGAATGAGAGGCCTGGAGGGAACTGCTGGCCTGCCTGGACCCCCTGGCCCCAGGGGGTTCCAGGGCATGGCAGGGGCCAGGGGCACTAGTGGAGAGCGAGGACCTCCAGGGACCGTGGGGCCCACAGGACTGCCAGGGCCCAAAGGGGAACGAGGAGAGAAGGGCGAGCCGCAGTCCCTTGCCACCCTCTACCAGCTTGTGAGCCAGGCCTGTGAGTCTGCCATTCAGACACACGTGTCAAAGTTCGACTCCTTCCACGAGAACACCAGGCCCCCCATGCCCATCTTGGAGCAGAAGCTGGAGCCGGGCACTGAGCCCCTGGGGTCCCCTGGCACCCGCAGCAAGGCCCTGGTTCCTGGAGAATGGGGGCGTGGTGGCCGCCACCTTGAGGGCAGAGGGGAGCCTGGAGCTGTTGGTCAGATGGGCAGCCCTGGGCAGCAGGGGGCTAGCACCCAGGGCCTCTGGGAGTGA
Amino sequence
MSSGDPAHLGLCLWLWLGATLGREQVQASGLLRLAVLPEDRLQMKWRESEGSGLGYLVQVKPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELTGSGRFLLARREFVIEDLKSSSLDRSSQRPLGSGAPEPTPSHTGSPDPEQASEPQVAFTPSQDPRTPGGSEWRETGPQFRCLPPVPADMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLSTKEQVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDVHTAARVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGLLSRLICQRLQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWRASRGGTPREVVVEGPAASTELHNLASRTEYLVSVFPIYEGGVGEGLRGLVTTAPLPPPRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSQLSMTELPGDAVQLAWVAAAPSGVLVYQITWTPLGEGKAHEISVPGNLGTAVLPGLGRHTEYDVTILAYYRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPALRPDGSLPGFDLMVAFSLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVYPAPLPPEHTIVFLVRLLPETPREAFALWQMTAEDFQPLLGVLLDAGKKSLTYFHRDPRAALQEATFDPQEVRKIFFGSFHKVHVAVGRSKVRLYVDCRKVAERPLGEMGSPPAAGFVTLGRLAKARGPRSSSAAFQLQMLQIVCSDTWADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACESAIQTHVSKFDSFHENTRPPMPILEQKLEPGTEPLGSPGTRSKALVPGEWGRGGRHLEGRGEPGAVGQMGSPGQQGASTQGLWE*