LHX4 LIM homeobox 4

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: LHX4
Type: protein-coding
Description: LIM homeobox 4
Entrez Gene ID: 89884
Genome: hg19
Position: chr1:180,199,399-180,248,119
Genome: hg38
Position: chr1:180,230,264-180,278,984
MIM: 602146 OMIM
HGNC: HGNC:21734 HGNC
Ensembl: ENSG00000121454 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Pathogenic	4	16
Likely pathogenic	0	6
Benign	12	64
Likely benign	0	68
Conflicting classifications of pathogenicity	0	14
Uncertain significance	0	156

Ranking

	ClinVar
	0
	0
	48
	228
	18

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	CPHD4
MIM	602146 OMIM
HGNC	HGNC:21734 HGNC
Ensembl	ENSG00000121454 Ensembl
AllianceGenome	HGNC:21734

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000263726.4	hg38	chr1	180,230,264	180,278,984	48,721
ENST00000263726.4	hg19	chr1	180,199,399	180,248,119	48,721

Key	Value
strand	+
UniProt	OG
start	180,199,432
Gene Symbol	LHX4
Entrez GeneId	89,884
Chr Band	1q25.2
end	180,244,187
chr	chr1

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