GDPD5 glycerophosphodiester phosphodiesterase domain containing 5
Information
- Symbol
- GDPD5
- Type
- protein-coding
- Description
- glycerophosphodiester phosphodiesterase domain containing 5
- Entrez Gene ID
- 81544
- Genome
- hg19
- Position
- chr11:75,145,685-75,236,986
- Genome
- hg38
- Position
- chr11:75,434,640-75,525,941
- MIM
- 609632 OMIM
- HGNC
- HGNC:28804 HGNC
- Ensembl
- ENSG00000158555 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Benign | 0 | 2 |
| Likely benign | 0 | 10 |
| Uncertain significance | 0 | 82 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
94 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | GDE2 |
| SYNONYM | PP1665 |
| MIM | 609632 OMIM |
| HGNC | HGNC:28804 HGNC |
| Ensembl | ENSG00000158555 Ensembl |
| AllianceGenome | HGNC:28804 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000533805.5 | hg38 | chr11 | 75,434,641 | 75,449,940 | 15,300 |
| ENST00000336898.8 | hg38 | chr11 | 75,434,640 | 75,525,941 | 91,302 |
| ENST00000533784.5 | hg38 | chr11 | 75,434,640 | 75,490,289 | 55,650 |
| ENST00000526177.5 | hg38 | chr11 | 75,434,640 | 75,452,331 | 17,692 |
| ENST00000529721.5 | hg38 | chr11 | 75,434,640 | 75,490,751 | 56,112 |
| ENST00000443276.6 | hg38 | chr11 | 75,434,641 | 75,477,851 | 43,211 |
| ENST00000526177.5 | hg19 | chr11 | 75,145,685 | 75,163,376 | 17,692 |
| ENST00000529721.5 | hg19 | chr11 | 75,145,685 | 75,201,796 | 56,112 |
| ENST00000336898.8 | hg19 | chr11 | 75,145,685 | 75,236,986 | 91,302 |
| ENST00000443276.6 | hg19 | chr11 | 75,145,686 | 75,188,896 | 43,211 |
| ENST00000533784.5 | hg19 | chr11 | 75,145,685 | 75,201,334 | 55,650 |
| ENST00000533805.5 | hg19 | chr11 | 75,145,686 | 75,160,985 | 15,300 |
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