TRMT1 tRNA methyltransferase 1

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Information
Clinical Significance
Ranking
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Information

Symbol: TRMT1
Type: protein-coding
Description: tRNA methyltransferase 1
Entrez Gene ID: 55621
Genome: hg19
Position: chr19:13,215,721-13,228,381
Genome: hg38
Position: chr19:13,104,907-13,117,567
MIM: 611669 OMIM
HGNC: HGNC:25980 HGNC
Ensembl: ENSG00000104907 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Pathogenic	4	26
Likely pathogenic	0	26
Benign	0	16
Likely benign	0	54
Uncertain significance	0	146

Ranking

	ClinVar
	0
	0
	36
	212
	8

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	MRT68
SYNONYM	TRM1
MIM	611669 OMIM
HGNC	HGNC:25980 HGNC
Ensembl	ENSG00000104907 Ensembl
AllianceGenome	HGNC:25980

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000357720.9	hg38	chr19	13,104,907	13,116,740	11,834
ENST00000592062.5	hg38	chr19	13,104,907	13,117,567	12,661
ENST00000221504.12	hg38	chr19	13,104,907	13,116,657	11,751
ENST00000437766.5	hg38	chr19	13,104,902	13,116,649	11,748
ENST00000221504.12	hg19	chr19	13,215,721	13,227,471	11,751
ENST00000357720.9	hg19	chr19	13,215,721	13,227,554	11,834
ENST00000437766.5	hg19	chr19	13,215,716	13,227,463	11,748
ENST00000592062.5	hg19	chr19	13,215,721	13,228,381	12,661

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