GDPD2 glycerophosphodiester phosphodiesterase domain containing 2

Information
Symbol
GDPD2
Type
protein-coding
Description
glycerophosphodiester phosphodiesterase domain containing 2
Entrez Gene ID
54857
Genome
hg19
Position
chrX:69,642,881-69,653,240
Genome
hg38
Position
chrX:70,423,031-70,433,390
MIM
300940 OMIM
HGNC
HGNC:25974 HGNC
Ensembl
ENSG00000130055 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Benign 0 2
Likely benign 0 12
not provided 6 0
Uncertain significance 0 26
Ranking
ClinVar
0
0
2
36
2
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM GDE3
SYNONYM OBDPF
MIM 300940 OMIM
HGNC HGNC:25974 HGNC
Ensembl ENSG00000130055 Ensembl
AllianceGenome HGNC:25974
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000374382.4 hg38 chrX 70,423,314 70,433,381 10,068
ENST00000453994.6 hg38 chrX 70,423,031 70,433,390 10,360
ENST00000536730.5 hg38 chrX 70,423,031 70,433,390 10,360
ENST00000538649.5 hg38 chrX 70,423,031 70,433,390 10,360
ENST00000453994.6 hg19 chrX 69,642,881 69,653,240 10,360
ENST00000536730.5 hg19 chrX 69,642,881 69,653,240 10,360
ENST00000538649.5 hg19 chrX 69,642,881 69,653,240 10,360
ENST00000374382.4 hg19 chrX 69,643,164 69,653,231 10,068
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