NKX3-1 NK3 homeobox 1

Go to:

Information
Clinical Significance
Ranking
Frequency
Disease area statistics
Locus Zoom
Variants
Genome browser

Information

Symbol: NKX3-1
Type: protein-coding
Description: NK3 homeobox 1
Entrez Gene ID: 4824
Genome: hg19
Position: chr8:23,536,210-23,540,451
Genome: hg38
Position: chr8:23,678,697-23,682,938
MIM: 602041 OMIM
HGNC: HGNC:7838 HGNC
Ensembl: ENSG00000167034 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Benign	0	4
Likely benign	0	2
not provided	4	0
Uncertain significance	0	32

Ranking

	ClinVar
	0
	0
	0
	38
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	BAPX2
SYNONYM	NKX3
SYNONYM	NKX3.1
SYNONYM	NKX3A
MIM	602041 OMIM
HGNC	HGNC:7838 HGNC
Ensembl	ENSG00000167034 Ensembl
AllianceGenome	HGNC:7838

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000523261.1	hg38	chr8	23,680,988	23,682,889	1,902
ENST00000380871.5	hg38	chr8	23,678,697	23,682,938	4,242
ENST00000380871.5	hg19	chr8	23,536,210	23,540,451	4,242
ENST00000523261.1	hg19	chr8	23,538,501	23,540,402	1,902

Key	Value
strand	-
UniProt	TSG
start	23,536,205
Gene Symbol	NKX3-1
Entrez GeneId	4,824
Chr Band	8p21.2
end	23,540,449
chr	chr8

Genome browser