LTA lymphotoxin alpha

Information
Symbol
LTA
Type
protein-coding
Description
lymphotoxin alpha
Entrez Gene ID
4049
Genome
hg19
Position
chr6:31,539,831-31,542,101
Genome
hg38
Position
chr6:31,572,054-31,574,324
MIM
153440 OMIM
HGNC
HGNC:6709 HGNC
Ensembl
ENSG00000226979 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Benign 0 4
Likely benign 0 2
not provided 5 0
risk factor 0 2
Uncertain significance 0 12
Ranking
ClinVar
0
0
0
18
2
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM LT
SYNONYM TNFB
SYNONYM TNFSF1
SYNONYM TNLG1E
MIM 153440 OMIM
HGNC HGNC:6709 HGNC
Ensembl ENSG00000226979 Ensembl
AllianceGenome HGNC:6709
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000454783.5 hg38 chr6 31,572,054 31,574,324 2,271
ENST00000418386.3 hg38 chr6 31,572,289 31,574,324 2,036
ENST00000454783.5 hg19 chr6 31,539,831 31,542,101 2,271
ENST00000418386.3 hg19 chr6 31,540,066 31,542,101 2,036
Genome browser