LMO2 LIM domain only 2

Go to:

Information
Clinical Significance
Ranking
Frequency
Disease area statistics
Locus Zoom
Variants
Genome browser

Information

Symbol: LMO2
Type: protein-coding
Description: LIM domain only 2
Entrez Gene ID: 4005
Genome: hg19
Position: chr11:33,880,122-33,913,623
Genome: hg38
Position: chr11:33,858,576-33,892,076
MIM: 180385 OMIM
HGNC: HGNC:6642 HGNC
Ensembl: ENSG00000135363 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Benign	0	2
Likely benign	0	2
not provided	1	0
Uncertain significance	0	26

Ranking

	ClinVar
	0
	0
	0
	30
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	LMO-2
SYNONYM	RBTN2
SYNONYM	RBTNL1
SYNONYM	RHOM2
SYNONYM	TTG2
MIM	180385 OMIM
HGNC	HGNC:6642 HGNC
Ensembl	ENSG00000135363 Ensembl
AllianceGenome	HGNC:6642

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000257818.3	hg38	chr11	33,858,576	33,892,076	33,501
ENST00000395833.7	hg38	chr11	33,858,576	33,869,816	11,241
ENST00000395833.7	hg19	chr11	33,880,122	33,891,362	11,241
ENST00000257818.3	hg19	chr11	33,880,122	33,913,623	33,502

Key	Value
strand	-
UniProt	OG
start	33,880,122
Gene Symbol	LMO2
Entrez GeneId	4,005
Chr Band	11p13
end	33,913,835
chr	chr11
Name	LIM domain only 2 (rhombotin-like 1) (RBTN2)

Genome browser