MALAT1 metastasis associated lung adenocarcinoma transcript 1
Information
- Symbol
- MALAT1
- Type
- ncRNA
- Description
- metastasis associated lung adenocarcinoma transcript 1
- Entrez Gene ID
- 378938
- Genome
- hg19
- Position
- chr11:65,266,522-65,273,939
- Genome
- hg38
- Position
- chr11:65,499,051-65,506,468
- MIM
- 607924 OMIM
- HGNC
- HGNC:29665 HGNC
- Ensembl
- ENSG00000251562 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar |
|---|
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
0 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | HCN |
| SYNONYM | LINC00047 |
| SYNONYM | NCRNA00047 |
| SYNONYM | NEAT2 |
| SYNONYM | PRO2853 |
| MIM | 607924 OMIM |
| HGNC | HGNC:29665 HGNC |
| Ensembl | ENSG00000251562 Ensembl |
| AllianceGenome | HGNC:29665 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000710857.1 | hg38 | chr11 | 65,499,056 | 65,503,584 | 4,529 |
| ENST00000710876.1 | hg38 | chr11 | 65,499,045 | 65,503,630 | 4,586 |
| ENST00000710926.1 | hg38 | chr11 | 65,499,045 | 65,504,463 | 5,419 |
| ENST00000710870.1 | hg38 | chr11 | 65,503,349 | 65,506,469 | 3,121 |
| ENST00000710867.1 | hg38 | chr11 | 65,501,009 | 65,504,879 | 3,871 |
| ENST00000710861.1 | hg38 | chr11 | 65,499,049 | 65,503,614 | 4,566 |
| ENST00000710862.1 | hg38 | chr11 | 65,499,051 | 65,506,468 | 7,418 |
| ENST00000710863.1 | hg38 | chr11 | 65,499,084 | 65,504,879 | 5,796 |
| ENST00000710945.1 | hg38 | chr11 | 65,501,397 | 65,505,453 | 4,057 |
| ENST00000710947.1 | hg38 | chr11 | 65,502,614 | 65,506,516 | 3,903 |
| ENST00000619449.3 | hg38 | chr11 | 65,497,688 | 65,502,964 | 5,277 |
| ENST00000710857.1 | hg19 | chr11 | 65,266,527 | 65,271,055 | 4,529 |
| ENST00000710861.1 | hg19 | chr11 | 65,266,520 | 65,271,085 | 4,566 |
| ENST00000710862.1 | hg19 | chr11 | 65,266,522 | 65,273,939 | 7,418 |
| ENST00000710863.1 | hg19 | chr11 | 65,266,555 | 65,272,350 | 5,796 |
| ENST00000619449.3 | hg19 | chr11 | 65,265,159 | 65,270,435 | 5,277 |
| ENST00000710867.1 | hg19 | chr11 | 65,268,480 | 65,272,350 | 3,871 |
| ENST00000710870.1 | hg19 | chr11 | 65,270,820 | 65,273,940 | 3,121 |
| ENST00000710945.1 | hg19 | chr11 | 65,268,868 | 65,272,924 | 4,057 |
| ENST00000710947.1 | hg19 | chr11 | 65,270,085 | 65,273,987 | 3,903 |
| ENST00000710876.1 | hg19 | chr11 | 65,266,516 | 65,271,101 | 4,586 |
| ENST00000710926.1 | hg19 | chr11 | 65,266,516 | 65,271,934 | 5,419 |
| Key | Value |
|---|---|
| strand | + |
| start | 65,265,232 |
| Gene Symbol | MALAT1 |
| Entrez GeneId | 378,938 |
| Chr Band | 11q31.1 |
| end | 65,273,982 |
| chr | chr11 |
| Name | metastasis associated lung adenocarcinoma transcript 1 ( lnc-RNA; non-protein coding) |
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