TFPT TCF3 fusion partner

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Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: TFPT
Type: protein-coding
Description: TCF3 fusion partner
Entrez Gene ID: 29844
Genome: hg19
Position: chr19:54,610,327-54,619,037
Genome: hg38
Position: chr19:54,107,020-54,115,657
MIM: 609519 OMIM
HGNC: HGNC:13630 HGNC
Ensembl: ENSG00000105619 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Likely benign	0	4
Conflicting classifications of pathogenicity	0	2
Uncertain significance	0	38

Ranking

	ClinVar
	0
	0
	0
	42
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

[No Data.]

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
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Filtering	:

Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	FB1
SYNONYM	INO80F
SYNONYM	amida
MIM	609519 OMIM
HGNC	HGNC:13630 HGNC
Ensembl	ENSG00000105619 Ensembl
AllianceGenome	HGNC:13630

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000391759.6	hg38	chr19	54,107,020	54,115,657	8,638
ENST00000391758.5	hg38	chr19	54,107,020	54,115,074	8,055
ENST00000391757.1	hg38	chr19	54,107,020	54,115,288	8,269
ENST00000391758.5	hg19	chr19	54,610,327	54,618,454	8,128
ENST00000391757.1	hg19	chr19	54,610,327	54,618,668	8,342
ENST00000391759.6	hg19	chr19	54,610,327	54,619,037	8,711

Key	Value
strand	-
UniProt	OG
start	54,610,319
Gene Symbol	TFPT
Entrez GeneId	29,844
Chr Band	19q13
end	54,619,054
chr	chr19
Name	TCF3 (E2A) fusion partner (in childhood leukaemia)

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