JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase
Information
- Symbol
- JMJD6
- Type
- protein-coding
- Description
- jumonji domain containing 6, arginine demethylase and lysine hydroxylase
- Entrez Gene ID
- 23210
- Genome
- hg19
- Position
- chr17:74,708,914-74,722,761
- Genome
- hg38
- Position
- chr17:76,712,832-76,726,679
- MIM
- 604914 OMIM
- HGNC
- HGNC:19355 HGNC
- Ensembl
- ENSG00000070495 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Benign | 0 | 2 |
| not provided | 2 | 0 |
| Uncertain significance | 0 | 34 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
36 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | PSR |
| SYNONYM | PTDSR |
| SYNONYM | PTDSR1 |
| MIM | 604914 OMIM |
| HGNC | HGNC:19355 HGNC |
| Ensembl | ENSG00000070495 Ensembl |
| AllianceGenome | HGNC:19355 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000585429.1 | hg38 | chr17 | 76,718,500 | 76,726,503 | 8,004 |
| ENST00000617192.4 | hg38 | chr17 | 76,712,832 | 76,726,799 | 13,968 |
| ENST00000445478.6 | hg38 | chr17 | 76,712,832 | 76,726,679 | 13,848 |
| ENST00000397625.9 | hg38 | chr17 | 76,718,451 | 76,726,606 | 8,156 |
| ENST00000445478.6 | hg19 | chr17 | 74,708,914 | 74,722,761 | 13,848 |
| ENST00000617192.4 | hg19 | chr17 | 74,708,914 | 74,722,881 | 13,968 |
| ENST00000397625.9 | hg19 | chr17 | 74,714,533 | 74,722,688 | 8,156 |
| ENST00000585429.1 | hg19 | chr17 | 74,714,582 | 74,722,585 | 8,004 |
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