KDM2A lysine demethylase 2A

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: KDM2A
Type: protein-coding
Description: lysine demethylase 2A
Entrez Gene ID: 22992
Genome: hg19
Position: chr11:66,886,734-67,025,553
Genome: hg38
Position: chr11:67,119,263-67,258,082
MIM: 605657 OMIM
HGNC: HGNC:13606 HGNC
Ensembl: ENSG00000173120 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Benign	0	4
Likely benign	0	2
Uncertain significance	0	52

Ranking

	ClinVar
	0
	0
	0
	58
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

[No Data.]

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

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Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	CXXC8
SYNONYM	FBL11
SYNONYM	FBL7
SYNONYM	FBXL11
SYNONYM	JHDM1A
SYNONYM	LILINA
MIM	605657 OMIM
HGNC	HGNC:13606 HGNC
Ensembl	ENSG00000173120 Ensembl
AllianceGenome	HGNC:13606

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000530342.2	hg38	chr11	67,240,047	67,256,373	16,327
ENST00000308783.9	hg38	chr11	67,121,269	67,255,062	133,794
ENST00000398645.6	hg38	chr11	67,119,269	67,257,665	138,397
ENST00000529006.7	hg38	chr11	67,119,263	67,258,082	138,820
ENST00000529006.7	hg19	chr11	66,886,734	67,025,553	138,820
ENST00000398645.6	hg19	chr11	66,886,740	67,025,136	138,397
ENST00000308783.9	hg19	chr11	66,888,740	67,022,533	133,794
ENST00000530342.2	hg19	chr11	67,007,518	67,023,844	16,327

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