GPNMB glycoprotein nmb

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: GPNMB
Type: protein-coding
Description: glycoprotein nmb
Entrez Gene ID: 10457
Genome: hg19
Position: chr7:23,286,316-23,314,726
Genome: hg38
Position: chr7:23,246,697-23,275,107
MIM: 604368 OMIM
HGNC: HGNC:4462 HGNC
Ensembl: ENSG00000136235 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Pathogenic	0	12
Likely pathogenic	0	6
Benign	0	26
Likely benign	0	34
Uncertain significance	0	72

Ranking

	ClinVar
	0
	0
	18
	118
	6

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

[No Data.]

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

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Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

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Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	HGFIN
SYNONYM	NMB
SYNONYM	PLCA3
MIM	604368 OMIM
HGNC	HGNC:4462 HGNC
Ensembl	ENSG00000136235 Ensembl
AllianceGenome	HGNC:4462

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000258733.9	hg38	chr7	23,246,775	23,275,108	28,334
ENST00000381990.6	hg38	chr7	23,246,697	23,275,107	28,411
ENST00000647578.1	hg38	chr7	23,246,746	23,275,096	28,351
ENST00000409458.3	hg38	chr7	23,246,709	23,258,048	11,340
ENST00000381990.6	hg19	chr7	23,286,316	23,314,726	28,411
ENST00000409458.3	hg19	chr7	23,286,328	23,297,667	11,340
ENST00000647578.1	hg19	chr7	23,286,365	23,314,715	28,351
ENST00000258733.9	hg19	chr7	23,286,394	23,314,727	28,334

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