GAPLINC gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA
Information
- Symbol
- GAPLINC
- Type
- ncRNA
- Description
- gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA
- Entrez Gene ID
- 100505592
- Genome
- hg19
- Position
- chr18:3,466,295-3,478,976
- Genome
- hg38
- Position
- chr18:3,466,297-3,478,978
- HGNC
- HGNC:51308 HGNC
- Ensembl
- ENSG00000266835 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar |
|---|
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
0 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | LINC01540 |
| HGNC | HGNC:51308 HGNC |
| Ensembl | ENSG00000266835 Ensembl |
| AllianceGenome | HGNC:51308 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000579007.5 | hg38 | chr18 | 3,466,297 | 3,478,978 | 12,682 |
| ENST00000581029.5 | hg38 | chr18 | 3,466,250 | 3,473,203 | 6,954 |
| ENST00000581029.5 | hg19 | chr18 | 3,466,248 | 3,473,201 | 6,954 |
| ENST00000579007.5 | hg19 | chr18 | 3,466,295 | 3,478,976 | 12,682 |
Genome browser