PCAT19 prostate cancer associated transcript 19

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Information

Symbol: PCAT19
Type: ncRNA
Description: prostate cancer associated transcript 19
Entrez Gene ID: 100505495
Genome: hg19
Position: chr19:41,960,069-42,006,554
Genome: hg38
Position: chr19:41,454,164-41,500,644
MIM: 618192 OMIM
HGNC: HGNC:49593 HGNC
Ensembl: ENSG00000267107 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar

Ranking

	ClinVar
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Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

[No Data.]

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Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

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Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	LINC01190
MIM	618192 OMIM
HGNC	HGNC:49593 HGNC
Ensembl	ENSG00000267107 Ensembl
AllianceGenome	HGNC:49593

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000652160.1	hg38	chr19	41,455,713	41,500,644	44,932
ENST00000651572.3	hg38	chr19	41,454,169	41,501,255	47,087
ENST00000651789.1	hg38	chr19	41,454,173	41,479,141	24,969
ENST00000650748.1	hg38	chr19	41,454,169	41,500,644	46,476
ENST00000588495.6	hg38	chr19	41,454,164	41,500,644	46,481
ENST00000588495.6	hg19	chr19	41,960,069	42,006,554	46,486
ENST00000650748.1	hg19	chr19	41,960,074	42,006,554	46,481
ENST00000652160.1	hg19	chr19	41,961,618	42,006,554	44,937
ENST00000651572.3	hg19	chr19	41,960,074	42,007,165	47,092
ENST00000651789.1	hg19	chr19	41,960,078	41,985,049	24,972

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