chr12:40717072:G>T Detail (hg19) (LRRK2)

Information

Genome

Assembly Position
hg19 chr12:40,717,072-40,717,072
hg38 chr12:40,323,270-40,323,270 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_198578.3:c.5620G>T NP_940980.3:p.Glu1874Ter
Ensemble ENST00000680790.1:c.5365G>T ENST00000680790.1:p.Glu1789Ter
ENST00000298910.12:c.5620G>T ENST00000298910.12:p.Glu1874Ter
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance not provided
Review star
Show details
Links
Type Database ID Link
Gene MIM 609007 OMIM
HGNC 18618 HGNC
Ensembl ENSG00000188906 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
not provided no assertion provided Autosomal dominant Parkinson disease 8 unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.440 PARKINSON DISEASE 8 (disorder) NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_198578.4(LRRK2):c.5620G>T (p.Glu1874Ter) AND Autosomal dominant Parkinson disease 8 ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs281865054 dbSNP
Genome
hg19
Position
chr12:40,717,072-40,717,072
Variant Type
snv
Reference Allele
G
Alternative Allele
T
Genome browser