ENST00000401408.6 CLHC1

Information
Transcript ID
ENST00000401408.6
Genome
hg19
Position
chr2:55,399,683-55,459,429
Strand
-
CDS length
1,761
Amino acid length
587
Gene symbol
CLHC1
Gene type
protein-coding
Gene description
clathrin heavy chain linker domain containing 1
Gene Entrez Gene ID
130162
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
13 55,399,683 55,403,122
12 55,404,738 55,404,917
11 55,407,646 55,407,848
10 55,408,706 55,408,880
9 55,433,406 55,433,512
8 55,435,762 55,435,846
7 55,436,540 55,436,652
6 55,436,766 55,436,967
5 55,439,809 55,439,942
4 55,444,947 55,445,134
3 55,449,371 55,449,629
2 55,455,168 55,455,340
1 55,459,359 55,459,429
CDS
Exon number Type Start Stop
13 CDS 55,402,926 55,403,122
12 CDS 55,404,738 55,404,917
11 CDS 55,407,646 55,407,848
10 CDS 55,408,706 55,408,880
9 CDS 55,433,406 55,433,512
8 CDS 55,435,762 55,435,846
7 CDS 55,436,540 55,436,652
6 CDS 55,436,766 55,436,967
5 CDS 55,439,809 55,439,942
4 CDS 55,444,947 55,445,134
3 CDS 55,449,371 55,449,547
Other genome
Genome Chromosome Start End Links
hg38 chr2 55,172,547 55,232,293 Link
CDS sequence
ATGTCAGTTCATCAAATAAGAAAACATGCAGTTCTCCCACCTATCATTTGTAGAAGTGACAAGGAATTTTTGGAAAGTGTGCAAAGATACATAATTACAGAAACTGAAAGACTGGGCTGTAGTGAGGAAGGACCTGCTGATGAATATTACATCATATACCGAAATGTTTTTGATAAGGTAATAGAGCATATCACTGCATACAAATCCATTCTTACTTCAATCAAAAAAGAATATGATGCCTTTATTGAGACAATAAAGAAAGACCGAAGAACTACATTTTGTCTTCATGGAAAACTTAAAGGTTTGGCAGCAGAGCCTACAGCTTTGGTATATTACAGGAAAAGAACAATCCAACTTGAAGCAAAAATGAGGATTATCGAAAGTAATTCCTCGAAGATTCAATCTCAAATAGATCACATCAAGCAGTGTAGGGCAGAGTATGACACAAAAGAAGTAAAATATTGTACTTTCTCCAAAGATCCTTCAAAACCTATTCCAGGCATGACTCTTCAAGAATCCATGAATCTAGATGCTCTCACTAAATACATGAAACATCTTGAAGATAAATATGCAGAAATTAAACAAGCTATGTTGATAAAATATGTGCCAGCTCAGAGGAAGGCTGATTTAGATGAAGAAATGATTGTGTTATTAAAACGGCGAGATGTAGCTGAAAATCTGAACAAAAAATTGCAGTTTTGTCATCAAAGACTGCAGATAATTTCACAGGCACTTAGTTCATGGGTAAAATCTGATATGAGCAGCCCATTTCAAGACTTTGTGGAGCAAATTCAGAAAACCAAATATTTACAAGGTGACCAAGGCATTGTTGAAGAACTAATGGAAGATGATCCACGCAGGGCAAAAGAAGCTGAAATTATGCTTCACTACATTGAAAGGTTTAATGAGTTAATCTCACTTGGTGAATATGAAAAGGCAGCTTGTTATGCAGCAAACAGTCCTAGAAGAATTCTTCGAAACATTGGTACAATGAATACATTTAAGGCTGTTGGAAAAATTAGAGGAAAGCCTCTTCCATTACTCTTATTTTTTGAGGCCCTCTTTATCACAAGTCATGCTTTTCCATGTCCTGTTGATGCAGCTCTAACCCTGGAAGGAATCAAATGTGGATTATCAGAAAAACGGTTAGATTTAGTTACCAATTGGGTTACACAGGAAAGACTGACATTTTCTGAGGAGGCTGGGGATGTGATTTGTGATTATGGGGAGCAGGATACTTATAACAAGGCCAAGTGCCTGGCTTTAGCTCAGATTGTCTACAGTGAATGTGGCCTGCACAAGAAAGCTATTCTTTGCTTGTGTAAACAGGGTCAGACTCATAGGGTCATGGAGTACATACAGCAGTTGAAGGACTTTACTACCGATGACCTGTTGCAGCTATTAATGTCATGTCCCCAAGTTGAATTAATTCAGTGTCTCACTAAAGAGTTGAATGAGAAACAACCATCTTTATCTTTTGGTCTTGCTATACTTCATCTGTTCTCTGCAGACATGAAAAAAGTTGGCATTAAGCTACTTCAAGAAATCAATAAAGGTGGGATAGATGCAGTAGAAAGTCTTATGATAAATGATTCCTTTTGCTCCATAGAAAAGTGGCAAGAAGTGGCAAATATATGTTCACAGAATGGCTTTGACAAATTATCTAATGACATCACGTCTATTCTTCGATCTCAGGCTGCAGTTACAGAAATTTCTGAAGAGGATGACGCAGTCAACCTAATGGAACATGTGTTTTGGTAG
Amino sequence
MSVHQIRKHAVLPPIICRSDKEFLESVQRYIITETERLGCSEEGPADEYYIIYRNVFDKVIEHITAYKSILTSIKKEYDAFIETIKKDRRTTFCLHGKLKGLAAEPTALVYYRKRTIQLEAKMRIIESNSSKIQSQIDHIKQCRAEYDTKEVKYCTFSKDPSKPIPGMTLQESMNLDALTKYMKHLEDKYAEIKQAMLIKYVPAQRKADLDEEMIVLLKRRDVAENLNKKLQFCHQRLQIISQALSSWVKSDMSSPFQDFVEQIQKTKYLQGDQGIVEELMEDDPRRAKEAEIMLHYIERFNELISLGEYEKAACYAANSPRRILRNIGTMNTFKAVGKIRGKPLPLLLFFEALFITSHAFPCPVDAALTLEGIKCGLSEKRLDLVTNWVTQERLTFSEEAGDVICDYGEQDTYNKAKCLALAQIVYSECGLHKKAILCLCKQGQTHRVMEYIQQLKDFTTDDLLQLLMSCPQVELIQCLTKELNEKQPSLSFGLAILHLFSADMKKVGIKLLQEINKGGIDAVESLMINDSFCSIEKWQEVANICSQNGFDKLSNDITSILRSQAAVTEISEEDDAVNLMEHVFW*